Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/bioblend/toolshed/tools/__init__.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """ |
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2 Interaction with a Tool Shed instance tools |
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3 """ |
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4 from bioblend.galaxy.client import Client |
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5 |
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6 |
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7 class ToolShedToolClient(Client): |
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8 |
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9 def __init__(self, toolshed_instance): |
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10 self.module = 'tools' |
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11 super().__init__(toolshed_instance) |
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12 |
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13 def search_tools(self, q, page=1, page_size=10): |
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14 """ |
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15 Search for tools in a Galaxy Tool Shed. |
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16 |
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17 :type q: str |
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18 :param q: query string for searching purposes |
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19 |
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20 :type page: int |
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21 :param page: page requested |
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22 |
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23 :type page_size: int |
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24 :param page_size: page size requested |
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25 |
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26 :rtype: dict |
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27 :return: dictionary containing search hits as well as metadata for the |
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28 search. For example:: |
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29 |
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30 {'hits': [{'matched_terms': [], |
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31 'score': 3.0, |
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32 'tool': {'description': 'convert between various FASTQ quality formats', |
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33 'id': '69819b84d55f521efda001e0926e7233', |
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34 'name': 'FASTQ Groomer', |
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35 'repo_name': None, |
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36 'repo_owner_username': 'devteam'}}, |
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37 {'matched_terms': [], |
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38 'score': 3.0, |
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39 'tool': {'description': 'converts a bam file to fastq files.', |
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40 'id': '521e282770fd94537daff87adad2551b', |
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41 'name': 'Defuse BamFastq', |
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42 'repo_name': None, |
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43 'repo_owner_username': 'jjohnson'}}], |
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44 'hostname': 'https://testtoolshed.g2.bx.psu.edu/', |
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45 'page': '1', |
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46 'page_size': '2', |
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47 'total_results': '118'} |
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48 """ |
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49 params = dict(q=q, page=page, page_size=page_size) |
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50 return self._get(params=params) |