Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/seqtk_seq_wrong_name.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 #!/usr/bin/env cwl-runner |
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2 cwlVersion: v1.0 |
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3 class: CommandLineTool |
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4 id: "seqtk_seq" |
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5 doc: "Convert to FASTA (seqtk)" |
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6 inputs: |
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7 - id: input1 |
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8 type: File |
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9 inputBinding: |
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10 position: 1 |
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11 prefix: "-a" |
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12 outputs: |
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13 - id: output1 |
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14 type: File |
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15 outputBinding: |
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16 glob: out |
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17 baseCommand: ["seqtk", "seq"] |
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18 arguments: [] |
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19 stdout: out |
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20 hints: |
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21 SoftwareRequirement: |
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22 packages: |
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23 - package: seqtk_seq |
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24 version: |
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25 - '1.2' |
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26 specs: |
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27 - https://anaconda.org/bioconda/seqtk |
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28 - https://packages.debian.org/sid/seqtk |