Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/test_docker.py @ 0:4f3585e2f14b draft default tip
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author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 from distutils import spawn |
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2 from pathlib import Path |
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3 |
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4 from cwltool.main import main |
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5 |
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6 from .util import get_data, get_main_output, needs_docker |
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7 |
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8 |
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9 @needs_docker |
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10 def test_docker_workflow(tmp_path: Path) -> None: |
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11 """Basic test for docker with a CWL Workflow.""" |
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12 result_code, _, stderr = get_main_output( |
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13 [ |
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14 "--default-container", |
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15 "debian", |
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16 "--outdir", |
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17 str(tmp_path), |
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18 get_data("tests/wf/hello-workflow.cwl"), |
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19 "--usermessage", |
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20 "hello", |
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21 ] |
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22 ) |
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23 assert "completed success" in stderr |
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24 assert (tmp_path / "response.txt").read_text("utf-8") == "hello" |
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25 assert result_code == 0 |
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26 |
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27 |
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28 def test_docker_iwdr() -> None: |
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29 result_code = main( |
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30 [ |
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31 "--default-container", |
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32 "debian", |
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33 get_data("tests/wf/iwdr-entry.cwl"), |
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34 "--message", |
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35 "hello", |
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36 ] |
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37 ) |
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38 docker_installed = bool(spawn.find_executable("docker")) |
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39 if docker_installed: |
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40 assert result_code == 0 |
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41 else: |
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42 assert result_code != 0 |
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43 |
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44 |
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45 @needs_docker |
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46 def test_docker_incorrect_image_pull() -> None: |
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47 result_code = main( |
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48 [ |
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49 "--default-container", |
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50 "non-existant-weird-image", |
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51 get_data("tests/wf/hello-workflow.cwl"), |
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52 "--usermessage", |
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53 "hello", |
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54 ] |
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55 ) |
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56 assert result_code != 0 |
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57 |
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58 |
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59 @needs_docker |
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60 def test_docker_file_mount() -> None: |
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61 # test for bug in |
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62 # ContainerCommandLineJob.create_file_and_add_volume() |
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63 # |
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64 # the bug was that it would use the file literal contents as the |
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65 # temporary file name, which can easily result in a file name that |
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66 # is too long or otherwise invalid. This test case uses ".." |
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67 result_code = main( |
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68 [get_data("tests/wf/literalfile.cwl"), get_data("tests/wf/literalfile-job.yml")] |
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69 ) |
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70 assert result_code == 0 |