Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/wf/expect_trick_packed.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 { |
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2 "$graph": [ |
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3 { |
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4 "class": "CommandLineTool", |
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5 "doc": "Reverse each line using the `rev` command", |
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6 "inputs": [ |
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7 { |
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8 "type": "File", |
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9 "inputBinding": {}, |
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10 "id": "#revtool.cwl/revtool_input" |
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11 } |
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12 ], |
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13 "outputs": [ |
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14 { |
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15 "type": "File", |
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16 "outputBinding": { |
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17 "glob": "output.txt" |
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18 }, |
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19 "id": "#revtool.cwl/revtool_output" |
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20 } |
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21 ], |
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22 "baseCommand": "rev", |
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23 "stdout": "output.txt", |
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24 "id": "#revtool.cwl", |
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25 "$namespaces": { |
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26 "iana": "https://www.iana.org/assignments/media-types/" |
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27 } |
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28 }, |
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29 { |
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30 "class": "CommandLineTool", |
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31 "doc": "Sort lines using the `sort` command", |
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32 "inputs": [ |
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33 { |
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34 "id": "#sorttool.cwl/reverse", |
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35 "type": "boolean", |
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36 "inputBinding": { |
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37 "position": 1, |
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38 "prefix": "--reverse" |
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39 } |
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40 }, |
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41 { |
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42 "id": "#sorttool.cwl/sorted_input", |
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43 "type": "File", |
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44 "inputBinding": { |
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45 "position": 2 |
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46 } |
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47 } |
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48 ], |
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49 "outputs": [ |
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50 { |
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51 "id": "#sorttool.cwl/sorted_output", |
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52 "type": "File", |
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53 "outputBinding": { |
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54 "glob": "output.txt" |
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55 } |
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56 } |
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57 ], |
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58 "baseCommand": "sort", |
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59 "stdout": "output.txt", |
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60 "id": "#sorttool.cwl" |
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61 }, |
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62 { |
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63 "class": "Workflow", |
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64 "doc": "Reverse the lines in a document, then sort those lines.", |
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65 "hints": [ |
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66 { |
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67 "class": "DockerRequirement", |
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68 "dockerPull": "debian:8" |
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69 } |
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70 ], |
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71 "inputs": [ |
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72 { |
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73 "type": "string", |
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74 "doc": "Here to test for a bug in --pack", |
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75 "id": "#main/name" |
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76 }, |
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77 { |
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78 "type": "boolean", |
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79 "default": true, |
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80 "doc": "If true, reverse (decending) sort", |
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81 "id": "#main/reverse_sort" |
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82 }, |
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83 { |
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84 "type": "File", |
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85 "doc": "The input file to be processed.", |
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86 "format": "https://www.iana.org/assignments/media-types/text/plain", |
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87 "default": { |
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88 "class": "File", |
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89 "location": "hello.txt" |
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90 }, |
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91 "id": "#main/workflow_input" |
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92 } |
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93 ], |
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94 "outputs": [ |
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95 { |
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96 "type": "File", |
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97 "outputSource": "#main/sorted/sorted_output", |
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98 "doc": "The output with the lines reversed and sorted.", |
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99 "id": "#main/sorted_output" |
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100 } |
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101 ], |
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102 "steps": [ |
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103 { |
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104 "in": [ |
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105 { |
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106 "source": "#main/workflow_input", |
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107 "id": "#main/rev/revtool_input" |
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108 } |
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109 ], |
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110 "out": [ |
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111 "#main/rev/revtool_output" |
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112 ], |
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113 "run": "#revtool.cwl", |
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114 "id": "#main/rev" |
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115 }, |
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116 { |
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117 "in": [ |
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118 { |
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119 "source": "#main/reverse_sort", |
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120 "id": "#main/sorted/reverse" |
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121 }, |
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122 { |
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123 "source": "#main/rev/revtool_output", |
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124 "id": "#main/sorted/sorted_input" |
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125 } |
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126 ], |
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127 "out": [ |
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128 "#main/sorted/sorted_output" |
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129 ], |
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130 "run": "#sorttool.cwl", |
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131 "id": "#main/sorted" |
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132 } |
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133 ], |
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134 "id": "#main" |
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135 } |
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136 ], |
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137 "cwlVersion": "v1.0", |
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138 "$schemas": [ |
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139 "empty2.ttl", |
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140 "empty.ttl" |
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141 ] |
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142 } |