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annotate env/lib/python3.9/site-packages/cwltool/tests/wf/sorttool.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 #!/usr/bin/env cwl-runner |
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2 # Example command line program wrapper for the Unix tool "sort" |
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3 # demonstrating command line flags. |
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4 class: CommandLineTool |
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5 doc: "Sort lines using the `sort` command" |
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6 cwlVersion: v1.0 |
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7 |
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8 # This example is similar to the previous one, with an additional input |
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9 # parameter called "reverse". It is a boolean parameter, which is |
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10 # intepreted as a command line flag. The value of "prefix" is used for |
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11 # flag to put on the command line if "reverse" is true, if "reverse" is |
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12 # false, no flag is added. |
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13 # |
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14 # This example also introduced the "position" field. This indicates the |
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15 # sorting order of items on the command line. Lower numbers are placed |
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16 # before higher numbers. Here, the "--reverse" flag (if present) will be |
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17 # added to the command line before the input file path. |
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18 inputs: |
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19 - id: reverse |
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20 type: boolean |
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21 inputBinding: |
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22 position: 1 |
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23 prefix: "--reverse" |
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24 - id: sorted_input |
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25 type: File |
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26 inputBinding: |
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27 position: 2 |
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28 |
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29 outputs: |
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30 - id: sorted_output |
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31 type: File |
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32 outputBinding: |
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33 glob: output.txt |
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34 |
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35 baseCommand: sort |
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36 stdout: output.txt |