annotate env/lib/python3.9/site-packages/networkx/algorithms/centrality/tests/test_percolation_centrality.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

import networkx as nx
from networkx.testing import almost_equal


def example1a_G():
    G = nx.Graph()
    G.add_node(1, percolation=0.1)
    G.add_node(2, percolation=0.2)
    G.add_node(3, percolation=0.2)
    G.add_node(4, percolation=0.2)
    G.add_node(5, percolation=0.3)
    G.add_node(6, percolation=0.2)
    G.add_node(7, percolation=0.5)
    G.add_node(8, percolation=0.5)
    G.add_edges_from([(1, 4), (2, 4), (3, 4), (4, 5), (5, 6), (6, 7), (6, 8)])
    return G


def example1b_G():
    G = nx.Graph()
    G.add_node(1, percolation=0.3)
    G.add_node(2, percolation=0.5)
    G.add_node(3, percolation=0.5)
    G.add_node(4, percolation=0.2)
    G.add_node(5, percolation=0.3)
    G.add_node(6, percolation=0.2)
    G.add_node(7, percolation=0.1)
    G.add_node(8, percolation=0.1)
    G.add_edges_from([(1, 4), (2, 4), (3, 4), (4, 5), (5, 6), (6, 7), (6, 8)])
    return G


class TestPercolationCentrality:
    def test_percolation_example1a(self):
        """percolation centrality: example 1a"""
        G = example1a_G()
        p = nx.percolation_centrality(G)
        p_answer = {4: 0.625, 6: 0.667}
        for n in p_answer:
            assert almost_equal(p[n], p_answer[n], places=3)

    def test_percolation_example1b(self):
        """percolation centrality: example 1a"""
        G = example1b_G()
        p = nx.percolation_centrality(G)
        p_answer = {4: 0.825, 6: 0.4}
        for n in p_answer:
            assert almost_equal(p[n], p_answer[n], places=3)

    def test_converge_to_betweenness(self):
        """percolation centrality: should converge to betweenness
        centrality when all nodes are percolated the same"""
        # taken from betweenness test test_florentine_families_graph
        G = nx.florentine_families_graph()
        b_answer = {
            "Acciaiuoli": 0.000,
            "Albizzi": 0.212,
            "Barbadori": 0.093,
            "Bischeri": 0.104,
            "Castellani": 0.055,
            "Ginori": 0.000,
            "Guadagni": 0.255,
            "Lamberteschi": 0.000,
            "Medici": 0.522,
            "Pazzi": 0.000,
            "Peruzzi": 0.022,
            "Ridolfi": 0.114,
            "Salviati": 0.143,
            "Strozzi": 0.103,
            "Tornabuoni": 0.092,
        }

        p_states = {k: 1.0 for k, v in b_answer.items()}
        p_answer = nx.percolation_centrality(G, states=p_states)
        for n in sorted(G):
            assert almost_equal(p_answer[n], b_answer[n], places=3)

        p_states = {k: 0.3 for k, v in b_answer.items()}
        p_answer = nx.percolation_centrality(G, states=p_states)
        for n in sorted(G):
            assert almost_equal(p_answer[n], b_answer[n], places=3)