Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/networkx/algorithms/centrality/voterank_alg.py @ 0:4f3585e2f14b draft default tip
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author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """Algorithm to select influential nodes in a graph using VoteRank.""" |
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2 |
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3 __all__ = ["voterank"] |
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4 |
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5 |
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6 def voterank(G, number_of_nodes=None): |
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7 """Select a list of influential nodes in a graph using VoteRank algorithm |
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8 |
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9 VoteRank [1]_ computes a ranking of the nodes in a graph G based on a |
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10 voting scheme. With VoteRank, all nodes vote for each of its in-neighbours |
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11 and the node with the highest votes is elected iteratively. The voting |
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12 ability of out-neighbors of elected nodes is decreased in subsequent turns. |
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13 |
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14 Note: We treat each edge independently in case of multigraphs. |
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15 |
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16 Parameters |
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17 ---------- |
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18 G : graph |
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19 A NetworkX graph. |
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20 |
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21 number_of_nodes : integer, optional |
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22 Number of ranked nodes to extract (default all nodes). |
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23 |
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24 Returns |
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25 ------- |
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26 voterank : list |
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27 Ordered list of computed seeds. |
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28 Only nodes with positive number of votes are returned. |
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29 |
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30 References |
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31 ---------- |
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32 .. [1] Zhang, J.-X. et al. (2016). |
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33 Identifying a set of influential spreaders in complex networks. |
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34 Sci. Rep. 6, 27823; doi: 10.1038/srep27823. |
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35 """ |
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36 influential_nodes = [] |
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37 voterank = {} |
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38 if len(G) == 0: |
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39 return influential_nodes |
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40 if number_of_nodes is None or number_of_nodes > len(G): |
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41 number_of_nodes = len(G) |
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42 if G.is_directed(): |
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43 # For directed graphs compute average out-degree |
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44 avgDegree = sum(deg for _, deg in G.out_degree()) / len(G) |
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45 else: |
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46 # For undirected graphs compute average degree |
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47 avgDegree = sum(deg for _, deg in G.degree()) / len(G) |
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48 # step 1 - initiate all nodes to (0,1) (score, voting ability) |
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49 for n in G.nodes(): |
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50 voterank[n] = [0, 1] |
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51 # Repeat steps 1b to 4 until num_seeds are elected. |
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52 for _ in range(number_of_nodes): |
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53 # step 1b - reset rank |
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54 for n in G.nodes(): |
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55 voterank[n][0] = 0 |
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56 # step 2 - vote |
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57 for n, nbr in G.edges(): |
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58 # In directed graphs nodes only vote for their in-neighbors |
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59 voterank[n][0] += voterank[nbr][1] |
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60 if not G.is_directed(): |
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61 voterank[nbr][0] += voterank[n][1] |
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62 for n in influential_nodes: |
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63 voterank[n][0] = 0 |
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64 # step 3 - select top node |
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65 n = max(G.nodes, key=lambda x: voterank[x][0]) |
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66 if voterank[n][0] == 0: |
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67 return influential_nodes |
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68 influential_nodes.append(n) |
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69 # weaken the selected node |
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70 voterank[n] = [0, 0] |
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71 # step 4 - update voterank properties |
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72 for _, nbr in G.edges(n): |
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73 voterank[nbr][1] -= 1 / avgDegree |
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74 voterank[nbr][1] = max(voterank[nbr][1], 0) |
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75 return influential_nodes |