annotate env/lib/python3.9/site-packages/networkx/algorithms/isomorphism/isomorphvf2.py @ 0:4f3585e2f14b draft default tip

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author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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1 """
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2 *************
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3 VF2 Algorithm
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4 *************
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5
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6 An implementation of VF2 algorithm for graph ismorphism testing.
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7
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8 The simplest interface to use this module is to call networkx.is_isomorphic().
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9
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10 Introduction
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11 ------------
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12
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13 The GraphMatcher and DiGraphMatcher are responsible for matching
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14 graphs or directed graphs in a predetermined manner. This
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15 usually means a check for an isomorphism, though other checks
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16 are also possible. For example, a subgraph of one graph
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17 can be checked for isomorphism to a second graph.
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18
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19 Matching is done via syntactic feasibility. It is also possible
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20 to check for semantic feasibility. Feasibility, then, is defined
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21 as the logical AND of the two functions.
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22
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23 To include a semantic check, the (Di)GraphMatcher class should be
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24 subclassed, and the semantic_feasibility() function should be
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25 redefined. By default, the semantic feasibility function always
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26 returns True. The effect of this is that semantics are not
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27 considered in the matching of G1 and G2.
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28
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29 Examples
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30 --------
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31
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32 Suppose G1 and G2 are isomorphic graphs. Verification is as follows:
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33
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34 >>> from networkx.algorithms import isomorphism
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35 >>> G1 = nx.path_graph(4)
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36 >>> G2 = nx.path_graph(4)
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37 >>> GM = isomorphism.GraphMatcher(G1, G2)
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38 >>> GM.is_isomorphic()
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39 True
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40
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41 GM.mapping stores the isomorphism mapping from G1 to G2.
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42
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43 >>> GM.mapping
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44 {0: 0, 1: 1, 2: 2, 3: 3}
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45
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46
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47 Suppose G1 and G2 are isomorphic directed graphs
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48 graphs. Verification is as follows:
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49
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50 >>> G1 = nx.path_graph(4, create_using=nx.DiGraph())
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51 >>> G2 = nx.path_graph(4, create_using=nx.DiGraph())
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52 >>> DiGM = isomorphism.DiGraphMatcher(G1, G2)
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53 >>> DiGM.is_isomorphic()
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54 True
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55
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56 DiGM.mapping stores the isomorphism mapping from G1 to G2.
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57
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58 >>> DiGM.mapping
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59 {0: 0, 1: 1, 2: 2, 3: 3}
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60
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61
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62
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63 Subgraph Isomorphism
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64 --------------------
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65 Graph theory literature can be ambiguous about the meaning of the
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66 above statement, and we seek to clarify it now.
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67
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68 In the VF2 literature, a mapping M is said to be a graph-subgraph
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69 isomorphism iff M is an isomorphism between G2 and a subgraph of G1.
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70 Thus, to say that G1 and G2 are graph-subgraph isomorphic is to say
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71 that a subgraph of G1 is isomorphic to G2.
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72
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73 Other literature uses the phrase 'subgraph isomorphic' as in 'G1 does
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74 not have a subgraph isomorphic to G2'. Another use is as an in adverb
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75 for isomorphic. Thus, to say that G1 and G2 are subgraph isomorphic
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76 is to say that a subgraph of G1 is isomorphic to G2.
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77
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78 Finally, the term 'subgraph' can have multiple meanings. In this
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79 context, 'subgraph' always means a 'node-induced subgraph'. Edge-induced
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80 subgraph isomorphisms are not directly supported, but one should be
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81 able to perform the check by making use of nx.line_graph(). For
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82 subgraphs which are not induced, the term 'monomorphism' is preferred
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83 over 'isomorphism'.
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84
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85 Let G=(N,E) be a graph with a set of nodes N and set of edges E.
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86
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87 If G'=(N',E') is a subgraph, then:
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88 N' is a subset of N
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89 E' is a subset of E
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90
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91 If G'=(N',E') is a node-induced subgraph, then:
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92 N' is a subset of N
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93 E' is the subset of edges in E relating nodes in N'
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94
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95 If G'=(N',E') is an edge-induced subgraph, then:
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96 N' is the subset of nodes in N related by edges in E'
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97 E' is a subset of E
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98
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99 If G'=(N',E') is a monomorphism, then:
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100 N' is a subset of N
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101 E' is a subset of the set of edges in E relating nodes in N'
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102
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103 Note that if G' is a node-induced subgraph of G, then it is always a
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104 subgraph monomorphism of G, but the opposite is not always true, as a
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105 monomorphism can have fewer edges.
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106
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107 References
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108 ----------
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109 [1] Luigi P. Cordella, Pasquale Foggia, Carlo Sansone, Mario Vento,
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110 "A (Sub)Graph Isomorphism Algorithm for Matching Large Graphs",
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111 IEEE Transactions on Pattern Analysis and Machine Intelligence,
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112 vol. 26, no. 10, pp. 1367-1372, Oct., 2004.
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113 http://ieeexplore.ieee.org/iel5/34/29305/01323804.pdf
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114
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115 [2] L. P. Cordella, P. Foggia, C. Sansone, M. Vento, "An Improved
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116 Algorithm for Matching Large Graphs", 3rd IAPR-TC15 Workshop
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117 on Graph-based Representations in Pattern Recognition, Cuen,
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118 pp. 149-159, 2001.
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119 http://amalfi.dis.unina.it/graph/db/papers/vf-algorithm.pdf
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120
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121 See Also
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122 --------
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123 syntactic_feasibility(), semantic_feasibility()
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124
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125 Notes
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126 -----
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127
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128 The implementation handles both directed and undirected graphs as well
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129 as multigraphs.
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130
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131 In general, the subgraph isomorphism problem is NP-complete whereas the
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132 graph isomorphism problem is most likely not NP-complete (although no
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133 polynomial-time algorithm is known to exist).
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134
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135 """
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136
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137 # This work was originally coded by Christopher Ellison
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138 # as part of the Computational Mechanics Python (CMPy) project.
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139 # James P. Crutchfield, principal investigator.
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140 # Complexity Sciences Center and Physics Department, UC Davis.
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141
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142 import sys
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143
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144 __all__ = ["GraphMatcher", "DiGraphMatcher"]
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145
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146
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147 class GraphMatcher:
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148 """Implementation of VF2 algorithm for matching undirected graphs.
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149
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150 Suitable for Graph and MultiGraph instances.
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151 """
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152
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153 def __init__(self, G1, G2):
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154 """Initialize GraphMatcher.
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155
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156 Parameters
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157 ----------
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158 G1,G2: NetworkX Graph or MultiGraph instances.
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159 The two graphs to check for isomorphism or monomorphism.
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160
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161 Examples
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162 --------
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163 To create a GraphMatcher which checks for syntactic feasibility:
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164
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165 >>> from networkx.algorithms import isomorphism
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166 >>> G1 = nx.path_graph(4)
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167 >>> G2 = nx.path_graph(4)
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168 >>> GM = isomorphism.GraphMatcher(G1, G2)
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169 """
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170 self.G1 = G1
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171 self.G2 = G2
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172 self.G1_nodes = set(G1.nodes())
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173 self.G2_nodes = set(G2.nodes())
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174 self.G2_node_order = {n: i for i, n in enumerate(G2)}
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175
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176 # Set recursion limit.
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177 self.old_recursion_limit = sys.getrecursionlimit()
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178 expected_max_recursion_level = len(self.G2)
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179 if self.old_recursion_limit < 1.5 * expected_max_recursion_level:
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180 # Give some breathing room.
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181 sys.setrecursionlimit(int(1.5 * expected_max_recursion_level))
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182
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183 # Declare that we will be searching for a graph-graph isomorphism.
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184 self.test = "graph"
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185
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186 # Initialize state
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187 self.initialize()
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188
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189 def reset_recursion_limit(self):
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190 """Restores the recursion limit."""
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191 # TODO:
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192 # Currently, we use recursion and set the recursion level higher.
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193 # It would be nice to restore the level, but because the
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194 # (Di)GraphMatcher classes make use of cyclic references, garbage
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195 # collection will never happen when we define __del__() to
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196 # restore the recursion level. The result is a memory leak.
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197 # So for now, we do not automatically restore the recursion level,
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198 # and instead provide a method to do this manually. Eventually,
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199 # we should turn this into a non-recursive implementation.
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200 sys.setrecursionlimit(self.old_recursion_limit)
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201
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202 def candidate_pairs_iter(self):
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203 """Iterator over candidate pairs of nodes in G1 and G2."""
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204
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205 # All computations are done using the current state!
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206
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207 G1_nodes = self.G1_nodes
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208 G2_nodes = self.G2_nodes
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209 min_key = self.G2_node_order.__getitem__
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210
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211 # First we compute the inout-terminal sets.
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212 T1_inout = [node for node in self.inout_1 if node not in self.core_1]
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213 T2_inout = [node for node in self.inout_2 if node not in self.core_2]
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214
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215 # If T1_inout and T2_inout are both nonempty.
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216 # P(s) = T1_inout x {min T2_inout}
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217 if T1_inout and T2_inout:
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218 node_2 = min(T2_inout, key=min_key)
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219 for node_1 in T1_inout:
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220 yield node_1, node_2
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221
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222 else:
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223 # If T1_inout and T2_inout were both empty....
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224 # P(s) = (N_1 - M_1) x {min (N_2 - M_2)}
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225 # if not (T1_inout or T2_inout): # as suggested by [2], incorrect
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226 if 1: # as inferred from [1], correct
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227 # First we determine the candidate node for G2
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228 other_node = min(G2_nodes - set(self.core_2), key=min_key)
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229 for node in self.G1:
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230 if node not in self.core_1:
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231 yield node, other_node
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232
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233 # For all other cases, we don't have any candidate pairs.
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234
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235 def initialize(self):
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236 """Reinitializes the state of the algorithm.
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237
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238 This method should be redefined if using something other than GMState.
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239 If only subclassing GraphMatcher, a redefinition is not necessary.
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240
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241 """
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242
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243 # core_1[n] contains the index of the node paired with n, which is m,
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244 # provided n is in the mapping.
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245 # core_2[m] contains the index of the node paired with m, which is n,
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246 # provided m is in the mapping.
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247 self.core_1 = {}
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248 self.core_2 = {}
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249
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250 # See the paper for definitions of M_x and T_x^{y}
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251
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252 # inout_1[n] is non-zero if n is in M_1 or in T_1^{inout}
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253 # inout_2[m] is non-zero if m is in M_2 or in T_2^{inout}
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254 #
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255 # The value stored is the depth of the SSR tree when the node became
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256 # part of the corresponding set.
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257 self.inout_1 = {}
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258 self.inout_2 = {}
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259 # Practically, these sets simply store the nodes in the subgraph.
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260
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261 self.state = GMState(self)
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262
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263 # Provide a convenient way to access the isomorphism mapping.
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264 self.mapping = self.core_1.copy()
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265
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266 def is_isomorphic(self):
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267 """Returns True if G1 and G2 are isomorphic graphs."""
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268
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269 # Let's do two very quick checks!
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270 # QUESTION: Should we call faster_graph_could_be_isomorphic(G1,G2)?
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271 # For now, I just copy the code.
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272
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273 # Check global properties
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274 if self.G1.order() != self.G2.order():
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275 return False
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276
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277 # Check local properties
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278 d1 = sorted(d for n, d in self.G1.degree())
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279 d2 = sorted(d for n, d in self.G2.degree())
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280 if d1 != d2:
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281 return False
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282
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283 try:
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284 x = next(self.isomorphisms_iter())
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285 return True
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286 except StopIteration:
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287 return False
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288
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289 def isomorphisms_iter(self):
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290 """Generator over isomorphisms between G1 and G2."""
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291 # Declare that we are looking for a graph-graph isomorphism.
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292 self.test = "graph"
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293 self.initialize()
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294 yield from self.match()
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295
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296 def match(self):
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297 """Extends the isomorphism mapping.
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298
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299 This function is called recursively to determine if a complete
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300 isomorphism can be found between G1 and G2. It cleans up the class
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301 variables after each recursive call. If an isomorphism is found,
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302 we yield the mapping.
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303
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304 """
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305 if len(self.core_1) == len(self.G2):
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306 # Save the final mapping, otherwise garbage collection deletes it.
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307 self.mapping = self.core_1.copy()
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308 # The mapping is complete.
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309 yield self.mapping
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310 else:
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311 for G1_node, G2_node in self.candidate_pairs_iter():
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312 if self.syntactic_feasibility(G1_node, G2_node):
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313 if self.semantic_feasibility(G1_node, G2_node):
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314 # Recursive call, adding the feasible state.
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315 newstate = self.state.__class__(self, G1_node, G2_node)
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316 yield from self.match()
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317
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318 # restore data structures
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319 newstate.restore()
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320
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321 def semantic_feasibility(self, G1_node, G2_node):
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322 """Returns True if adding (G1_node, G2_node) is symantically feasible.
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323
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324 The semantic feasibility function should return True if it is
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325 acceptable to add the candidate pair (G1_node, G2_node) to the current
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326 partial isomorphism mapping. The logic should focus on semantic
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327 information contained in the edge data or a formalized node class.
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328
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329 By acceptable, we mean that the subsequent mapping can still become a
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330 complete isomorphism mapping. Thus, if adding the candidate pair
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331 definitely makes it so that the subsequent mapping cannot become a
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332 complete isomorphism mapping, then this function must return False.
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333
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334 The default semantic feasibility function always returns True. The
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335 effect is that semantics are not considered in the matching of G1
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336 and G2.
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337
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338 The semantic checks might differ based on the what type of test is
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339 being performed. A keyword description of the test is stored in
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340 self.test. Here is a quick description of the currently implemented
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341 tests::
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342
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343 test='graph'
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344 Indicates that the graph matcher is looking for a graph-graph
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345 isomorphism.
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346
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347 test='subgraph'
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348 Indicates that the graph matcher is looking for a subgraph-graph
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349 isomorphism such that a subgraph of G1 is isomorphic to G2.
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350
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351 test='mono'
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352 Indicates that the graph matcher is looking for a subgraph-graph
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353 monomorphism such that a subgraph of G1 is monomorphic to G2.
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354
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355 Any subclass which redefines semantic_feasibility() must maintain
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356 the above form to keep the match() method functional. Implementations
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357 should consider multigraphs.
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358 """
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359 return True
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360
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361 def subgraph_is_isomorphic(self):
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362 """Returns True if a subgraph of G1 is isomorphic to G2."""
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363 try:
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364 x = next(self.subgraph_isomorphisms_iter())
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365 return True
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366 except StopIteration:
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367 return False
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368
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369 def subgraph_is_monomorphic(self):
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370 """Returns True if a subgraph of G1 is monomorphic to G2."""
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371 try:
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372 x = next(self.subgraph_monomorphisms_iter())
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373 return True
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374 except StopIteration:
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375 return False
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376
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377 # subgraph_is_isomorphic.__doc__ += "\n" + subgraph.replace('\n','\n'+indent)
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378
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379 def subgraph_isomorphisms_iter(self):
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380 """Generator over isomorphisms between a subgraph of G1 and G2."""
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381 # Declare that we are looking for graph-subgraph isomorphism.
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382 self.test = "subgraph"
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383 self.initialize()
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384 yield from self.match()
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385
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386 def subgraph_monomorphisms_iter(self):
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diff changeset
387 """Generator over monomorphisms between a subgraph of G1 and G2."""
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388 # Declare that we are looking for graph-subgraph monomorphism.
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389 self.test = "mono"
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390 self.initialize()
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391 yield from self.match()
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392
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393 # subgraph_isomorphisms_iter.__doc__ += "\n" + subgraph.replace('\n','\n'+indent)
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394
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395 def syntactic_feasibility(self, G1_node, G2_node):
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396 """Returns True if adding (G1_node, G2_node) is syntactically feasible.
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397
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398 This function returns True if it is adding the candidate pair
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399 to the current partial isomorphism/monomorphism mapping is allowable.
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400 The addition is allowable if the inclusion of the candidate pair does
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401 not make it impossible for an isomorphism/monomorphism to be found.
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402 """
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403
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404 # The VF2 algorithm was designed to work with graphs having, at most,
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405 # one edge connecting any two nodes. This is not the case when
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406 # dealing with an MultiGraphs.
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407 #
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408 # Basically, when we test the look-ahead rules R_neighbor, we will
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409 # make sure that the number of edges are checked. We also add
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410 # a R_self check to verify that the number of selfloops is acceptable.
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411 #
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412 # Users might be comparing Graph instances with MultiGraph instances.
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413 # So the generic GraphMatcher class must work with MultiGraphs.
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414 # Care must be taken since the value in the innermost dictionary is a
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415 # singlet for Graph instances. For MultiGraphs, the value in the
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416 # innermost dictionary is a list.
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417
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418 ###
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419 # Test at each step to get a return value as soon as possible.
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420 ###
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421
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422 # Look ahead 0
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423
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424 # R_self
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425
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426 # The number of selfloops for G1_node must equal the number of
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427 # self-loops for G2_node. Without this check, we would fail on
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428 # R_neighbor at the next recursion level. But it is good to prune the
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429 # search tree now.
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430
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431 if self.test == "mono":
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432 if self.G1.number_of_edges(G1_node, G1_node) < self.G2.number_of_edges(
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433 G2_node, G2_node
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434 ):
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435 return False
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436 else:
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437 if self.G1.number_of_edges(G1_node, G1_node) != self.G2.number_of_edges(
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438 G2_node, G2_node
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439 ):
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440 return False
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441
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442 # R_neighbor
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443
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444 # For each neighbor n' of n in the partial mapping, the corresponding
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445 # node m' is a neighbor of m, and vice versa. Also, the number of
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446 # edges must be equal.
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447 if self.test != "mono":
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448 for neighbor in self.G1[G1_node]:
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449 if neighbor in self.core_1:
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450 if not (self.core_1[neighbor] in self.G2[G2_node]):
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451 return False
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452 elif self.G1.number_of_edges(
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453 neighbor, G1_node
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454 ) != self.G2.number_of_edges(self.core_1[neighbor], G2_node):
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455 return False
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456
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457 for neighbor in self.G2[G2_node]:
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458 if neighbor in self.core_2:
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parents:
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459 if not (self.core_2[neighbor] in self.G1[G1_node]):
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460 return False
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parents:
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461 elif self.test == "mono":
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462 if self.G1.number_of_edges(
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parents:
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463 self.core_2[neighbor], G1_node
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parents:
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464 ) < self.G2.number_of_edges(neighbor, G2_node):
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465 return False
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466 else:
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467 if self.G1.number_of_edges(
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parents:
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468 self.core_2[neighbor], G1_node
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parents:
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469 ) != self.G2.number_of_edges(neighbor, G2_node):
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470 return False
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471
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472 if self.test != "mono":
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parents:
diff changeset
473 # Look ahead 1
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474
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475 # R_terminout
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476 # The number of neighbors of n in T_1^{inout} is equal to the
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477 # number of neighbors of m that are in T_2^{inout}, and vice versa.
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478 num1 = 0
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479 for neighbor in self.G1[G1_node]:
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parents:
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480 if (neighbor in self.inout_1) and (neighbor not in self.core_1):
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481 num1 += 1
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482 num2 = 0
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483 for neighbor in self.G2[G2_node]:
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parents:
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484 if (neighbor in self.inout_2) and (neighbor not in self.core_2):
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485 num2 += 1
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486 if self.test == "graph":
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487 if not (num1 == num2):
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488 return False
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489 else: # self.test == 'subgraph'
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490 if not (num1 >= num2):
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491 return False
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492
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493 # Look ahead 2
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494
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495 # R_new
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496
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497 # The number of neighbors of n that are neither in the core_1 nor
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498 # T_1^{inout} is equal to the number of neighbors of m
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parents:
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499 # that are neither in core_2 nor T_2^{inout}.
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500 num1 = 0
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501 for neighbor in self.G1[G1_node]:
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502 if neighbor not in self.inout_1:
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503 num1 += 1
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504 num2 = 0
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505 for neighbor in self.G2[G2_node]:
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506 if neighbor not in self.inout_2:
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507 num2 += 1
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508 if self.test == "graph":
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509 if not (num1 == num2):
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510 return False
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511 else: # self.test == 'subgraph'
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512 if not (num1 >= num2):
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513 return False
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514
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515 # Otherwise, this node pair is syntactically feasible!
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516 return True
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517
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518
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519 class DiGraphMatcher(GraphMatcher):
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520 """Implementation of VF2 algorithm for matching directed graphs.
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521
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522 Suitable for DiGraph and MultiDiGraph instances.
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523 """
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524
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525 def __init__(self, G1, G2):
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526 """Initialize DiGraphMatcher.
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527
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528 G1 and G2 should be nx.Graph or nx.MultiGraph instances.
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529
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530 Examples
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531 --------
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532 To create a GraphMatcher which checks for syntactic feasibility:
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533
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534 >>> from networkx.algorithms import isomorphism
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535 >>> G1 = nx.DiGraph(nx.path_graph(4, create_using=nx.DiGraph()))
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536 >>> G2 = nx.DiGraph(nx.path_graph(4, create_using=nx.DiGraph()))
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537 >>> DiGM = isomorphism.DiGraphMatcher(G1, G2)
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538 """
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539 super().__init__(G1, G2)
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540
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541 def candidate_pairs_iter(self):
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542 """Iterator over candidate pairs of nodes in G1 and G2."""
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543
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544 # All computations are done using the current state!
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545
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546 G1_nodes = self.G1_nodes
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547 G2_nodes = self.G2_nodes
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548 min_key = self.G2_node_order.__getitem__
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549
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550 # First we compute the out-terminal sets.
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551 T1_out = [node for node in self.out_1 if node not in self.core_1]
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552 T2_out = [node for node in self.out_2 if node not in self.core_2]
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553
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554 # If T1_out and T2_out are both nonempty.
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555 # P(s) = T1_out x {min T2_out}
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556 if T1_out and T2_out:
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557 node_2 = min(T2_out, key=min_key)
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558 for node_1 in T1_out:
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559 yield node_1, node_2
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560
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561 # If T1_out and T2_out were both empty....
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562 # We compute the in-terminal sets.
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563
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564 # elif not (T1_out or T2_out): # as suggested by [2], incorrect
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565 else: # as suggested by [1], correct
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566 T1_in = [node for node in self.in_1 if node not in self.core_1]
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567 T2_in = [node for node in self.in_2 if node not in self.core_2]
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568
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569 # If T1_in and T2_in are both nonempty.
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570 # P(s) = T1_out x {min T2_out}
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571 if T1_in and T2_in:
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572 node_2 = min(T2_in, key=min_key)
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573 for node_1 in T1_in:
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574 yield node_1, node_2
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575
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576 # If all terminal sets are empty...
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577 # P(s) = (N_1 - M_1) x {min (N_2 - M_2)}
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578
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579 # elif not (T1_in or T2_in): # as suggested by [2], incorrect
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580 else: # as inferred from [1], correct
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581 node_2 = min(G2_nodes - set(self.core_2), key=min_key)
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582 for node_1 in G1_nodes:
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583 if node_1 not in self.core_1:
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584 yield node_1, node_2
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585
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586 # For all other cases, we don't have any candidate pairs.
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587
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588 def initialize(self):
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589 """Reinitializes the state of the algorithm.
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590
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591 This method should be redefined if using something other than DiGMState.
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592 If only subclassing GraphMatcher, a redefinition is not necessary.
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593 """
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594
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595 # core_1[n] contains the index of the node paired with n, which is m,
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596 # provided n is in the mapping.
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597 # core_2[m] contains the index of the node paired with m, which is n,
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598 # provided m is in the mapping.
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599 self.core_1 = {}
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600 self.core_2 = {}
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601
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602 # See the paper for definitions of M_x and T_x^{y}
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603
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604 # in_1[n] is non-zero if n is in M_1 or in T_1^{in}
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605 # out_1[n] is non-zero if n is in M_1 or in T_1^{out}
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606 #
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607 # in_2[m] is non-zero if m is in M_2 or in T_2^{in}
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608 # out_2[m] is non-zero if m is in M_2 or in T_2^{out}
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609 #
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610 # The value stored is the depth of the search tree when the node became
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611 # part of the corresponding set.
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612 self.in_1 = {}
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613 self.in_2 = {}
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614 self.out_1 = {}
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615 self.out_2 = {}
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616
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617 self.state = DiGMState(self)
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618
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619 # Provide a convenient way to access the isomorphism mapping.
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620 self.mapping = self.core_1.copy()
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621
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622 def syntactic_feasibility(self, G1_node, G2_node):
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623 """Returns True if adding (G1_node, G2_node) is syntactically feasible.
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624
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625 This function returns True if it is adding the candidate pair
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diff changeset
626 to the current partial isomorphism/monomorphism mapping is allowable.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
627 The addition is allowable if the inclusion of the candidate pair does
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
628 not make it impossible for an isomorphism/monomorphism to be found.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
629 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
630
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
631 # The VF2 algorithm was designed to work with graphs having, at most,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
632 # one edge connecting any two nodes. This is not the case when
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
633 # dealing with an MultiGraphs.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
634 #
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
635 # Basically, when we test the look-ahead rules R_pred and R_succ, we
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
636 # will make sure that the number of edges are checked. We also add
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
637 # a R_self check to verify that the number of selfloops is acceptable.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
638
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
639 # Users might be comparing DiGraph instances with MultiDiGraph
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
640 # instances. So the generic DiGraphMatcher class must work with
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
641 # MultiDiGraphs. Care must be taken since the value in the innermost
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
642 # dictionary is a singlet for DiGraph instances. For MultiDiGraphs,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
643 # the value in the innermost dictionary is a list.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
644
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
645 ###
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
646 # Test at each step to get a return value as soon as possible.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
647 ###
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
648
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
649 # Look ahead 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
650
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
651 # R_self
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
652
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
653 # The number of selfloops for G1_node must equal the number of
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
654 # self-loops for G2_node. Without this check, we would fail on R_pred
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
655 # at the next recursion level. This should prune the tree even further.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
656 if self.test == "mono":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
657 if self.G1.number_of_edges(G1_node, G1_node) < self.G2.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
658 G2_node, G2_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
659 ):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
660 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
661 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
662 if self.G1.number_of_edges(G1_node, G1_node) != self.G2.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
663 G2_node, G2_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
664 ):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
665 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
666
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
667 # R_pred
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
668
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
669 # For each predecessor n' of n in the partial mapping, the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
670 # corresponding node m' is a predecessor of m, and vice versa. Also,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
671 # the number of edges must be equal
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
672 if self.test != "mono":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
673 for predecessor in self.G1.pred[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
674 if predecessor in self.core_1:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
675 if not (self.core_1[predecessor] in self.G2.pred[G2_node]):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
676 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
677 elif self.G1.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
678 predecessor, G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
679 ) != self.G2.number_of_edges(self.core_1[predecessor], G2_node):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
680 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
681
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
682 for predecessor in self.G2.pred[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
683 if predecessor in self.core_2:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
684 if not (self.core_2[predecessor] in self.G1.pred[G1_node]):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
685 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
686 elif self.test == "mono":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
687 if self.G1.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
688 self.core_2[predecessor], G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
689 ) < self.G2.number_of_edges(predecessor, G2_node):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
690 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
691 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
692 if self.G1.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
693 self.core_2[predecessor], G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
694 ) != self.G2.number_of_edges(predecessor, G2_node):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
695 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
696
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
697 # R_succ
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
698
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
699 # For each successor n' of n in the partial mapping, the corresponding
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
700 # node m' is a successor of m, and vice versa. Also, the number of
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
701 # edges must be equal.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
702 if self.test != "mono":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
703 for successor in self.G1[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
704 if successor in self.core_1:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
705 if not (self.core_1[successor] in self.G2[G2_node]):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
706 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
707 elif self.G1.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
708 G1_node, successor
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
709 ) != self.G2.number_of_edges(G2_node, self.core_1[successor]):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
710 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
711
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
712 for successor in self.G2[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
713 if successor in self.core_2:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
714 if not (self.core_2[successor] in self.G1[G1_node]):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
715 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
716 elif self.test == "mono":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
717 if self.G1.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
718 G1_node, self.core_2[successor]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
719 ) < self.G2.number_of_edges(G2_node, successor):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
720 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
721 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
722 if self.G1.number_of_edges(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
723 G1_node, self.core_2[successor]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
724 ) != self.G2.number_of_edges(G2_node, successor):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
725 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
726
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
727 if self.test != "mono":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
728
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
729 # Look ahead 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
730
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
731 # R_termin
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
732 # The number of predecessors of n that are in T_1^{in} is equal to the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
733 # number of predecessors of m that are in T_2^{in}.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
734 num1 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
735 for predecessor in self.G1.pred[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
736 if (predecessor in self.in_1) and (predecessor not in self.core_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
737 num1 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
738 num2 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
739 for predecessor in self.G2.pred[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
740 if (predecessor in self.in_2) and (predecessor not in self.core_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
741 num2 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
742 if self.test == "graph":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
743 if not (num1 == num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
744 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
745 else: # self.test == 'subgraph'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
746 if not (num1 >= num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
747 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
748
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
749 # The number of successors of n that are in T_1^{in} is equal to the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
750 # number of successors of m that are in T_2^{in}.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
751 num1 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
752 for successor in self.G1[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
753 if (successor in self.in_1) and (successor not in self.core_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
754 num1 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
755 num2 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
756 for successor in self.G2[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
757 if (successor in self.in_2) and (successor not in self.core_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
758 num2 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
759 if self.test == "graph":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
760 if not (num1 == num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
761 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
762 else: # self.test == 'subgraph'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
763 if not (num1 >= num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
764 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
765
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
766 # R_termout
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
767
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
768 # The number of predecessors of n that are in T_1^{out} is equal to the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
769 # number of predecessors of m that are in T_2^{out}.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
770 num1 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
771 for predecessor in self.G1.pred[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
772 if (predecessor in self.out_1) and (predecessor not in self.core_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
773 num1 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
774 num2 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
775 for predecessor in self.G2.pred[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
776 if (predecessor in self.out_2) and (predecessor not in self.core_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
777 num2 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
778 if self.test == "graph":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
779 if not (num1 == num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
780 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
781 else: # self.test == 'subgraph'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
782 if not (num1 >= num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
783 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
784
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
785 # The number of successors of n that are in T_1^{out} is equal to the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
786 # number of successors of m that are in T_2^{out}.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
787 num1 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
788 for successor in self.G1[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
789 if (successor in self.out_1) and (successor not in self.core_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
790 num1 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
791 num2 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
792 for successor in self.G2[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
793 if (successor in self.out_2) and (successor not in self.core_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
794 num2 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
795 if self.test == "graph":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
796 if not (num1 == num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
797 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
798 else: # self.test == 'subgraph'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
799 if not (num1 >= num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
800 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
801
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
802 # Look ahead 2
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
803
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
804 # R_new
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
805
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
806 # The number of predecessors of n that are neither in the core_1 nor
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
807 # T_1^{in} nor T_1^{out} is equal to the number of predecessors of m
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
808 # that are neither in core_2 nor T_2^{in} nor T_2^{out}.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
809 num1 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
810 for predecessor in self.G1.pred[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
811 if (predecessor not in self.in_1) and (predecessor not in self.out_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
812 num1 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
813 num2 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
814 for predecessor in self.G2.pred[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
815 if (predecessor not in self.in_2) and (predecessor not in self.out_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
816 num2 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
817 if self.test == "graph":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
818 if not (num1 == num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
819 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
820 else: # self.test == 'subgraph'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
821 if not (num1 >= num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
822 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
823
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
824 # The number of successors of n that are neither in the core_1 nor
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
825 # T_1^{in} nor T_1^{out} is equal to the number of successors of m
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
826 # that are neither in core_2 nor T_2^{in} nor T_2^{out}.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
827 num1 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
828 for successor in self.G1[G1_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
829 if (successor not in self.in_1) and (successor not in self.out_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
830 num1 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
831 num2 = 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
832 for successor in self.G2[G2_node]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
833 if (successor not in self.in_2) and (successor not in self.out_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
834 num2 += 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
835 if self.test == "graph":
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
836 if not (num1 == num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
837 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
838 else: # self.test == 'subgraph'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
839 if not (num1 >= num2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
840 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
841
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
842 # Otherwise, this node pair is syntactically feasible!
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
843 return True
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
844
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
845
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
846 class GMState:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
847 """Internal representation of state for the GraphMatcher class.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
848
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
849 This class is used internally by the GraphMatcher class. It is used
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
850 only to store state specific data. There will be at most G2.order() of
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
851 these objects in memory at a time, due to the depth-first search
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
852 strategy employed by the VF2 algorithm.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
853 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
854
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
855 def __init__(self, GM, G1_node=None, G2_node=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
856 """Initializes GMState object.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
857
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
858 Pass in the GraphMatcher to which this GMState belongs and the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
859 new node pair that will be added to the GraphMatcher's current
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
860 isomorphism mapping.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
861 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
862 self.GM = GM
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
863
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
864 # Initialize the last stored node pair.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
865 self.G1_node = None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
866 self.G2_node = None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
867 self.depth = len(GM.core_1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
868
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
869 if G1_node is None or G2_node is None:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
870 # Then we reset the class variables
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
871 GM.core_1 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
872 GM.core_2 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
873 GM.inout_1 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
874 GM.inout_2 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
875
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
876 # Watch out! G1_node == 0 should evaluate to True.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
877 if G1_node is not None and G2_node is not None:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
878 # Add the node pair to the isomorphism mapping.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
879 GM.core_1[G1_node] = G2_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
880 GM.core_2[G2_node] = G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
881
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
882 # Store the node that was added last.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
883 self.G1_node = G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
884 self.G2_node = G2_node
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shellac
parents:
diff changeset
885
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
886 # Now we must update the other two vectors.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
887 # We will add only if it is not in there already!
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
888 self.depth = len(GM.core_1)
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shellac
parents:
diff changeset
889
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
890 # First we add the new nodes...
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
891 if G1_node not in GM.inout_1:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
892 GM.inout_1[G1_node] = self.depth
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
893 if G2_node not in GM.inout_2:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
894 GM.inout_2[G2_node] = self.depth
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
895
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
896 # Now we add every other node...
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
897
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shellac
parents:
diff changeset
898 # Updates for T_1^{inout}
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shellac
parents:
diff changeset
899 new_nodes = set()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
900 for node in GM.core_1:
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shellac
parents:
diff changeset
901 new_nodes.update(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
902 [neighbor for neighbor in GM.G1[node] if neighbor not in GM.core_1]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
903 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
904 for node in new_nodes:
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shellac
parents:
diff changeset
905 if node not in GM.inout_1:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
906 GM.inout_1[node] = self.depth
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shellac
parents:
diff changeset
907
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shellac
parents:
diff changeset
908 # Updates for T_2^{inout}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
909 new_nodes = set()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
910 for node in GM.core_2:
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shellac
parents:
diff changeset
911 new_nodes.update(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
912 [neighbor for neighbor in GM.G2[node] if neighbor not in GM.core_2]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
913 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
914 for node in new_nodes:
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shellac
parents:
diff changeset
915 if node not in GM.inout_2:
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shellac
parents:
diff changeset
916 GM.inout_2[node] = self.depth
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shellac
parents:
diff changeset
917
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
918 def restore(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
919 """Deletes the GMState object and restores the class variables."""
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
920 # First we remove the node that was added from the core vectors.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
921 # Watch out! G1_node == 0 should evaluate to True.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
922 if self.G1_node is not None and self.G2_node is not None:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
923 del self.GM.core_1[self.G1_node]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
924 del self.GM.core_2[self.G2_node]
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shellac
parents:
diff changeset
925
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shellac
parents:
diff changeset
926 # Now we revert the other two vectors.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
927 # Thus, we delete all entries which have this depth level.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
928 for vector in (self.GM.inout_1, self.GM.inout_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
929 for node in list(vector.keys()):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
930 if vector[node] == self.depth:
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shellac
parents:
diff changeset
931 del vector[node]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
932
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shellac
parents:
diff changeset
933
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
934 class DiGMState:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
935 """Internal representation of state for the DiGraphMatcher class.
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shellac
parents:
diff changeset
936
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shellac
parents:
diff changeset
937 This class is used internally by the DiGraphMatcher class. It is used
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
938 only to store state specific data. There will be at most G2.order() of
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
939 these objects in memory at a time, due to the depth-first search
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
940 strategy employed by the VF2 algorithm.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
941
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
942 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
943
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
944 def __init__(self, GM, G1_node=None, G2_node=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
945 """Initializes DiGMState object.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
946
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
947 Pass in the DiGraphMatcher to which this DiGMState belongs and the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
948 new node pair that will be added to the GraphMatcher's current
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
949 isomorphism mapping.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
950 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
951 self.GM = GM
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
952
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shellac
parents:
diff changeset
953 # Initialize the last stored node pair.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
954 self.G1_node = None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
955 self.G2_node = None
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shellac
parents:
diff changeset
956 self.depth = len(GM.core_1)
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shellac
parents:
diff changeset
957
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
958 if G1_node is None or G2_node is None:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
959 # Then we reset the class variables
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
960 GM.core_1 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
961 GM.core_2 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
962 GM.in_1 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
963 GM.in_2 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
964 GM.out_1 = {}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
965 GM.out_2 = {}
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shellac
parents:
diff changeset
966
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
967 # Watch out! G1_node == 0 should evaluate to True.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
968 if G1_node is not None and G2_node is not None:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
969 # Add the node pair to the isomorphism mapping.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
970 GM.core_1[G1_node] = G2_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
971 GM.core_2[G2_node] = G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
972
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
973 # Store the node that was added last.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
974 self.G1_node = G1_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
975 self.G2_node = G2_node
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
976
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
977 # Now we must update the other four vectors.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
978 # We will add only if it is not in there already!
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
979 self.depth = len(GM.core_1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
980
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
981 # First we add the new nodes...
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
982 for vector in (GM.in_1, GM.out_1):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
983 if G1_node not in vector:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
984 vector[G1_node] = self.depth
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
985 for vector in (GM.in_2, GM.out_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
986 if G2_node not in vector:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
987 vector[G2_node] = self.depth
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
988
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
989 # Now we add every other node...
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
990
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
991 # Updates for T_1^{in}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
992 new_nodes = set()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
993 for node in GM.core_1:
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shellac
parents:
diff changeset
994 new_nodes.update(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
995 [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
996 predecessor
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
997 for predecessor in GM.G1.predecessors(node)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
998 if predecessor not in GM.core_1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
999 ]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1000 )
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shellac
parents:
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1001 for node in new_nodes:
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shellac
parents:
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1002 if node not in GM.in_1:
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shellac
parents:
diff changeset
1003 GM.in_1[node] = self.depth
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shellac
parents:
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1004
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shellac
parents:
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1005 # Updates for T_2^{in}
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shellac
parents:
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1006 new_nodes = set()
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shellac
parents:
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1007 for node in GM.core_2:
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shellac
parents:
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1008 new_nodes.update(
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shellac
parents:
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1009 [
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shellac
parents:
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1010 predecessor
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shellac
parents:
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1011 for predecessor in GM.G2.predecessors(node)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
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1012 if predecessor not in GM.core_2
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shellac
parents:
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1013 ]
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shellac
parents:
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1014 )
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shellac
parents:
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1015 for node in new_nodes:
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shellac
parents:
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1016 if node not in GM.in_2:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1017 GM.in_2[node] = self.depth
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shellac
parents:
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1018
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shellac
parents:
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1019 # Updates for T_1^{out}
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shellac
parents:
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1020 new_nodes = set()
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shellac
parents:
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1021 for node in GM.core_1:
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shellac
parents:
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1022 new_nodes.update(
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shellac
parents:
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1023 [
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shellac
parents:
diff changeset
1024 successor
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shellac
parents:
diff changeset
1025 for successor in GM.G1.successors(node)
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shellac
parents:
diff changeset
1026 if successor not in GM.core_1
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shellac
parents:
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1027 ]
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shellac
parents:
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1028 )
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shellac
parents:
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1029 for node in new_nodes:
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shellac
parents:
diff changeset
1030 if node not in GM.out_1:
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shellac
parents:
diff changeset
1031 GM.out_1[node] = self.depth
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shellac
parents:
diff changeset
1032
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shellac
parents:
diff changeset
1033 # Updates for T_2^{out}
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shellac
parents:
diff changeset
1034 new_nodes = set()
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shellac
parents:
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1035 for node in GM.core_2:
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shellac
parents:
diff changeset
1036 new_nodes.update(
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shellac
parents:
diff changeset
1037 [
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shellac
parents:
diff changeset
1038 successor
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shellac
parents:
diff changeset
1039 for successor in GM.G2.successors(node)
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shellac
parents:
diff changeset
1040 if successor not in GM.core_2
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shellac
parents:
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1041 ]
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shellac
parents:
diff changeset
1042 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
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1043 for node in new_nodes:
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shellac
parents:
diff changeset
1044 if node not in GM.out_2:
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shellac
parents:
diff changeset
1045 GM.out_2[node] = self.depth
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shellac
parents:
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1046
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shellac
parents:
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1047 def restore(self):
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shellac
parents:
diff changeset
1048 """Deletes the DiGMState object and restores the class variables."""
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shellac
parents:
diff changeset
1049
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shellac
parents:
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1050 # First we remove the node that was added from the core vectors.
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shellac
parents:
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1051 # Watch out! G1_node == 0 should evaluate to True.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
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1052 if self.G1_node is not None and self.G2_node is not None:
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shellac
parents:
diff changeset
1053 del self.GM.core_1[self.G1_node]
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shellac
parents:
diff changeset
1054 del self.GM.core_2[self.G2_node]
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shellac
parents:
diff changeset
1055
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shellac
parents:
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1056 # Now we revert the other four vectors.
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shellac
parents:
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1057 # Thus, we delete all entries which have this depth level.
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shellac
parents:
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1058 for vector in (self.GM.in_1, self.GM.in_2, self.GM.out_1, self.GM.out_2):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1059 for node in list(vector.keys()):
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shellac
parents:
diff changeset
1060 if vector[node] == self.depth:
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shellac
parents:
diff changeset
1061 del vector[node]