annotate env/lib/python3.9/site-packages/networkx/algorithms/tests/test_simple_paths.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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1 import random
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2
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3 import pytest
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4
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5 import networkx as nx
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6 from networkx import convert_node_labels_to_integers as cnlti
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7 from networkx.algorithms.simple_paths import _bidirectional_dijkstra
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8 from networkx.algorithms.simple_paths import _bidirectional_shortest_path
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9 from networkx.utils import arbitrary_element
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10 from networkx.utils import pairwise
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11
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12
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13 class TestIsSimplePath:
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14 """Unit tests for the
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15 :func:`networkx.algorithms.simple_paths.is_simple_path` function.
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16
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17 """
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18
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19 def test_empty_list(self):
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20 """Tests that the empty list is not a valid path, since there
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21 should be a one-to-one correspondence between paths as lists of
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22 nodes and paths as lists of edges.
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23
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24 """
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25 G = nx.trivial_graph()
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26 assert not nx.is_simple_path(G, [])
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27
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28 def test_trivial_path(self):
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29 """Tests that the trivial path, a path of length one, is
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30 considered a simple path in a graph.
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31
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32 """
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33 G = nx.trivial_graph()
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34 assert nx.is_simple_path(G, [0])
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35
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36 def test_trivial_nonpath(self):
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37 """Tests that a list whose sole element is an object not in the
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38 graph is not considered a simple path.
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39
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40 """
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41 G = nx.trivial_graph()
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42 assert not nx.is_simple_path(G, ["not a node"])
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43
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44 def test_simple_path(self):
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45 G = nx.path_graph(2)
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46 assert nx.is_simple_path(G, [0, 1])
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47
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48 def test_non_simple_path(self):
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49 G = nx.path_graph(2)
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50 assert not nx.is_simple_path(G, [0, 1, 0])
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51
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52 def test_cycle(self):
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53 G = nx.cycle_graph(3)
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54 assert not nx.is_simple_path(G, [0, 1, 2, 0])
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55
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56 def test_missing_node(self):
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57 G = nx.path_graph(2)
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58 assert not nx.is_simple_path(G, [0, 2])
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59
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60 def test_directed_path(self):
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61 G = nx.DiGraph([(0, 1), (1, 2)])
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62 assert nx.is_simple_path(G, [0, 1, 2])
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63
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64 def test_directed_non_path(self):
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65 G = nx.DiGraph([(0, 1), (1, 2)])
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66 assert not nx.is_simple_path(G, [2, 1, 0])
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67
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68 def test_directed_cycle(self):
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69 G = nx.DiGraph([(0, 1), (1, 2), (2, 0)])
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70 assert not nx.is_simple_path(G, [0, 1, 2, 0])
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71
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72 def test_multigraph(self):
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73 G = nx.MultiGraph([(0, 1), (0, 1)])
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74 assert nx.is_simple_path(G, [0, 1])
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75
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76 def test_multidigraph(self):
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77 G = nx.MultiDiGraph([(0, 1), (0, 1), (1, 0), (1, 0)])
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78 assert nx.is_simple_path(G, [0, 1])
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79
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80
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81 # Tests for all_simple_paths
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82 def test_all_simple_paths():
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83 G = nx.path_graph(4)
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84 paths = nx.all_simple_paths(G, 0, 3)
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85 assert {tuple(p) for p in paths} == {(0, 1, 2, 3)}
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86
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87
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88 def test_all_simple_paths_with_two_targets_emits_two_paths():
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89 G = nx.path_graph(4)
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90 G.add_edge(2, 4)
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91 paths = nx.all_simple_paths(G, 0, [3, 4])
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92 assert {tuple(p) for p in paths} == {(0, 1, 2, 3), (0, 1, 2, 4)}
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93
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94
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95 def test_digraph_all_simple_paths_with_two_targets_emits_two_paths():
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96 G = nx.path_graph(4, create_using=nx.DiGraph())
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97 G.add_edge(2, 4)
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98 paths = nx.all_simple_paths(G, 0, [3, 4])
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99 assert {tuple(p) for p in paths} == {(0, 1, 2, 3), (0, 1, 2, 4)}
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100
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101
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102 def test_all_simple_paths_with_two_targets_cutoff():
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103 G = nx.path_graph(4)
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104 G.add_edge(2, 4)
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105 paths = nx.all_simple_paths(G, 0, [3, 4], cutoff=3)
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106 assert {tuple(p) for p in paths} == {(0, 1, 2, 3), (0, 1, 2, 4)}
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107
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108
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109 def test_digraph_all_simple_paths_with_two_targets_cutoff():
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110 G = nx.path_graph(4, create_using=nx.DiGraph())
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111 G.add_edge(2, 4)
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112 paths = nx.all_simple_paths(G, 0, [3, 4], cutoff=3)
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113 assert {tuple(p) for p in paths} == {(0, 1, 2, 3), (0, 1, 2, 4)}
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114
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115
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116 def test_all_simple_paths_with_two_targets_in_line_emits_two_paths():
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117 G = nx.path_graph(4)
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118 paths = nx.all_simple_paths(G, 0, [2, 3])
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119 assert {tuple(p) for p in paths} == {(0, 1, 2), (0, 1, 2, 3)}
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120
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121
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122 def test_all_simple_paths_ignores_cycle():
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123 G = nx.cycle_graph(3, create_using=nx.DiGraph())
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124 G.add_edge(1, 3)
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125 paths = nx.all_simple_paths(G, 0, 3)
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126 assert {tuple(p) for p in paths} == {(0, 1, 3)}
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127
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128
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129 def test_all_simple_paths_with_two_targets_inside_cycle_emits_two_paths():
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130 G = nx.cycle_graph(3, create_using=nx.DiGraph())
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131 G.add_edge(1, 3)
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132 paths = nx.all_simple_paths(G, 0, [2, 3])
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133 assert {tuple(p) for p in paths} == {(0, 1, 2), (0, 1, 3)}
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134
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135
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136 def test_all_simple_paths_source_target():
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137 G = nx.path_graph(4)
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138 paths = nx.all_simple_paths(G, 1, 1)
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139 assert list(paths) == []
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140
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141
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142 def test_all_simple_paths_cutoff():
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143 G = nx.complete_graph(4)
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144 paths = nx.all_simple_paths(G, 0, 1, cutoff=1)
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145 assert {tuple(p) for p in paths} == {(0, 1)}
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146 paths = nx.all_simple_paths(G, 0, 1, cutoff=2)
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147 assert {tuple(p) for p in paths} == {(0, 1), (0, 2, 1), (0, 3, 1)}
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148
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149
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150 def test_all_simple_paths_on_non_trivial_graph():
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151 """ you may need to draw this graph to make sure it is reasonable """
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152 G = nx.path_graph(5, create_using=nx.DiGraph())
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153 G.add_edges_from([(0, 5), (1, 5), (1, 3), (5, 4), (4, 2), (4, 3)])
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154 paths = nx.all_simple_paths(G, 1, [2, 3])
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155 assert {tuple(p) for p in paths} == {
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156 (1, 2),
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157 (1, 3, 4, 2),
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158 (1, 5, 4, 2),
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159 (1, 3),
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160 (1, 2, 3),
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161 (1, 5, 4, 3),
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162 (1, 5, 4, 2, 3),
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163 }
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164 paths = nx.all_simple_paths(G, 1, [2, 3], cutoff=3)
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165 assert {tuple(p) for p in paths} == {
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166 (1, 2),
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167 (1, 3, 4, 2),
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168 (1, 5, 4, 2),
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169 (1, 3),
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170 (1, 2, 3),
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171 (1, 5, 4, 3),
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172 }
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173 paths = nx.all_simple_paths(G, 1, [2, 3], cutoff=2)
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174 assert {tuple(p) for p in paths} == {(1, 2), (1, 3), (1, 2, 3)}
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175
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176
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177 def test_all_simple_paths_multigraph():
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178 G = nx.MultiGraph([(1, 2), (1, 2)])
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179 paths = nx.all_simple_paths(G, 1, 1)
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180 assert list(paths) == []
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181 nx.add_path(G, [3, 1, 10, 2])
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182 paths = list(nx.all_simple_paths(G, 1, 2))
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183 assert len(paths) == 3
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184 assert {tuple(p) for p in paths} == {(1, 2), (1, 2), (1, 10, 2)}
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185
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186
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187 def test_all_simple_paths_multigraph_with_cutoff():
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188 G = nx.MultiGraph([(1, 2), (1, 2), (1, 10), (10, 2)])
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189 paths = list(nx.all_simple_paths(G, 1, 2, cutoff=1))
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190 assert len(paths) == 2
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191 assert {tuple(p) for p in paths} == {(1, 2), (1, 2)}
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192
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193
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194 def test_all_simple_paths_directed():
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195 G = nx.DiGraph()
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196 nx.add_path(G, [1, 2, 3])
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197 nx.add_path(G, [3, 2, 1])
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198 paths = nx.all_simple_paths(G, 1, 3)
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199 assert {tuple(p) for p in paths} == {(1, 2, 3)}
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200
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201
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202 def test_all_simple_paths_empty():
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203 G = nx.path_graph(4)
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204 paths = nx.all_simple_paths(G, 0, 3, cutoff=2)
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205 assert list(paths) == []
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206
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207
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208 def test_all_simple_paths_corner_cases():
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209 assert list(nx.all_simple_paths(nx.empty_graph(2), 0, 0)) == []
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210 assert list(nx.all_simple_paths(nx.empty_graph(2), 0, 1)) == []
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211 assert list(nx.all_simple_paths(nx.path_graph(9), 0, 8, 0)) == []
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212
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213
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214 def hamiltonian_path(G, source):
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215 source = arbitrary_element(G)
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216 neighbors = set(G[source]) - {source}
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217 n = len(G)
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218 for target in neighbors:
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219 for path in nx.all_simple_paths(G, source, target):
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220 if len(path) == n:
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221 yield path
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222
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223
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224 def test_hamiltonian_path():
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225 from itertools import permutations
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226
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227 G = nx.complete_graph(4)
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228 paths = [list(p) for p in hamiltonian_path(G, 0)]
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229 exact = [[0] + list(p) for p in permutations([1, 2, 3], 3)]
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230 assert sorted(paths) == sorted(exact)
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231
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232
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233 def test_cutoff_zero():
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234 G = nx.complete_graph(4)
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235 paths = nx.all_simple_paths(G, 0, 3, cutoff=0)
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236 assert list(list(p) for p in paths) == []
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237 paths = nx.all_simple_paths(nx.MultiGraph(G), 0, 3, cutoff=0)
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238 assert list(list(p) for p in paths) == []
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239
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240
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241 def test_source_missing():
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242 with pytest.raises(nx.NodeNotFound):
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243 G = nx.Graph()
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244 nx.add_path(G, [1, 2, 3])
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245 list(nx.all_simple_paths(nx.MultiGraph(G), 0, 3))
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246
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247
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248 def test_target_missing():
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249 with pytest.raises(nx.NodeNotFound):
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250 G = nx.Graph()
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251 nx.add_path(G, [1, 2, 3])
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252 list(nx.all_simple_paths(nx.MultiGraph(G), 1, 4))
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253
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254
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255 # Tests for all_simple_edge_paths
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256 def test_all_simple_edge_paths():
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257 G = nx.path_graph(4)
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258 paths = nx.all_simple_edge_paths(G, 0, 3)
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259 assert {tuple(p) for p in paths} == {((0, 1), (1, 2), (2, 3))}
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260
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261
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262 def test_all_simple_edge_paths_with_two_targets_emits_two_paths():
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263 G = nx.path_graph(4)
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264 G.add_edge(2, 4)
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265 paths = nx.all_simple_edge_paths(G, 0, [3, 4])
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266 assert {tuple(p) for p in paths} == {
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267 ((0, 1), (1, 2), (2, 3)),
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268 ((0, 1), (1, 2), (2, 4)),
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269 }
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270
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271
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272 def test_digraph_all_simple_edge_paths_with_two_targets_emits_two_paths():
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273 G = nx.path_graph(4, create_using=nx.DiGraph())
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274 G.add_edge(2, 4)
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275 paths = nx.all_simple_edge_paths(G, 0, [3, 4])
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276 assert {tuple(p) for p in paths} == {
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277 ((0, 1), (1, 2), (2, 3)),
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278 ((0, 1), (1, 2), (2, 4)),
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279 }
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280
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281
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282 def test_all_simple_edge_paths_with_two_targets_cutoff():
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283 G = nx.path_graph(4)
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284 G.add_edge(2, 4)
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285 paths = nx.all_simple_edge_paths(G, 0, [3, 4], cutoff=3)
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286 assert {tuple(p) for p in paths} == {
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287 ((0, 1), (1, 2), (2, 3)),
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288 ((0, 1), (1, 2), (2, 4)),
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289 }
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290
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291
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292 def test_digraph_all_simple_edge_paths_with_two_targets_cutoff():
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293 G = nx.path_graph(4, create_using=nx.DiGraph())
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294 G.add_edge(2, 4)
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295 paths = nx.all_simple_edge_paths(G, 0, [3, 4], cutoff=3)
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296 assert {tuple(p) for p in paths} == {
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297 ((0, 1), (1, 2), (2, 3)),
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298 ((0, 1), (1, 2), (2, 4)),
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299 }
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300
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301
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302 def test_all_simple_edge_paths_with_two_targets_in_line_emits_two_paths():
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303 G = nx.path_graph(4)
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304 paths = nx.all_simple_edge_paths(G, 0, [2, 3])
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305 assert {tuple(p) for p in paths} == {((0, 1), (1, 2)), ((0, 1), (1, 2), (2, 3))}
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306
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307
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308 def test_all_simple_edge_paths_ignores_cycle():
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309 G = nx.cycle_graph(3, create_using=nx.DiGraph())
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310 G.add_edge(1, 3)
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311 paths = nx.all_simple_edge_paths(G, 0, 3)
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312 assert {tuple(p) for p in paths} == {((0, 1), (1, 3))}
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313
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314
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315 def test_all_simple_edge_paths_with_two_targets_inside_cycle_emits_two_paths():
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316 G = nx.cycle_graph(3, create_using=nx.DiGraph())
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317 G.add_edge(1, 3)
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318 paths = nx.all_simple_edge_paths(G, 0, [2, 3])
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319 assert {tuple(p) for p in paths} == {((0, 1), (1, 2)), ((0, 1), (1, 3))}
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320
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321
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322 def test_all_simple_edge_paths_source_target():
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323 G = nx.path_graph(4)
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324 paths = nx.all_simple_edge_paths(G, 1, 1)
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325 assert list(paths) == []
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326
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327
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328 def test_all_simple_edge_paths_cutoff():
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329 G = nx.complete_graph(4)
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330 paths = nx.all_simple_edge_paths(G, 0, 1, cutoff=1)
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331 assert {tuple(p) for p in paths} == {((0, 1),)}
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332 paths = nx.all_simple_edge_paths(G, 0, 1, cutoff=2)
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333 assert {tuple(p) for p in paths} == {((0, 1),), ((0, 2), (2, 1)), ((0, 3), (3, 1))}
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334
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335
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336 def test_all_simple_edge_paths_on_non_trivial_graph():
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337 """ you may need to draw this graph to make sure it is reasonable """
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338 G = nx.path_graph(5, create_using=nx.DiGraph())
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339 G.add_edges_from([(0, 5), (1, 5), (1, 3), (5, 4), (4, 2), (4, 3)])
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340 paths = nx.all_simple_edge_paths(G, 1, [2, 3])
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341 assert {tuple(p) for p in paths} == {
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342 ((1, 2),),
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343 ((1, 3), (3, 4), (4, 2)),
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344 ((1, 5), (5, 4), (4, 2)),
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345 ((1, 3),),
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346 ((1, 2), (2, 3)),
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347 ((1, 5), (5, 4), (4, 3)),
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348 ((1, 5), (5, 4), (4, 2), (2, 3)),
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349 }
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350 paths = nx.all_simple_edge_paths(G, 1, [2, 3], cutoff=3)
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351 assert {tuple(p) for p in paths} == {
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352 ((1, 2),),
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353 ((1, 3), (3, 4), (4, 2)),
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354 ((1, 5), (5, 4), (4, 2)),
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355 ((1, 3),),
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356 ((1, 2), (2, 3)),
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357 ((1, 5), (5, 4), (4, 3)),
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358 }
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359 paths = nx.all_simple_edge_paths(G, 1, [2, 3], cutoff=2)
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360 assert {tuple(p) for p in paths} == {((1, 2),), ((1, 3),), ((1, 2), (2, 3))}
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361
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362
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363 def test_all_simple_edge_paths_multigraph():
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364 G = nx.MultiGraph([(1, 2), (1, 2)])
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365 paths = nx.all_simple_edge_paths(G, 1, 1)
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366 assert list(paths) == []
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367 nx.add_path(G, [3, 1, 10, 2])
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368 paths = list(nx.all_simple_edge_paths(G, 1, 2))
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369 assert len(paths) == 3
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370 assert {tuple(p) for p in paths} == {
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371 ((1, 2, 0),),
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372 ((1, 2, 1),),
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373 ((1, 10, 0), (10, 2, 0)),
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374 }
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375
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376
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377 def test_all_simple_edge_paths_multigraph_with_cutoff():
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378 G = nx.MultiGraph([(1, 2), (1, 2), (1, 10), (10, 2)])
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379 paths = list(nx.all_simple_edge_paths(G, 1, 2, cutoff=1))
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380 assert len(paths) == 2
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381 assert {tuple(p) for p in paths} == {((1, 2, 0),), ((1, 2, 1),)}
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382
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383
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384 def test_all_simple_edge_paths_directed():
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385 G = nx.DiGraph()
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386 nx.add_path(G, [1, 2, 3])
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387 nx.add_path(G, [3, 2, 1])
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388 paths = nx.all_simple_edge_paths(G, 1, 3)
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389 assert {tuple(p) for p in paths} == {((1, 2), (2, 3))}
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390
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391
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392 def test_all_simple_edge_paths_empty():
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393 G = nx.path_graph(4)
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394 paths = nx.all_simple_edge_paths(G, 0, 3, cutoff=2)
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395 assert list(paths) == []
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396
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397
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398 def test_all_simple_edge_paths_corner_cases():
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399 assert list(nx.all_simple_edge_paths(nx.empty_graph(2), 0, 0)) == []
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400 assert list(nx.all_simple_edge_paths(nx.empty_graph(2), 0, 1)) == []
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401 assert list(nx.all_simple_edge_paths(nx.path_graph(9), 0, 8, 0)) == []
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402
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403
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404 def hamiltonian_edge_path(G, source):
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405 source = arbitrary_element(G)
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406 neighbors = set(G[source]) - {source}
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407 n = len(G)
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408 for target in neighbors:
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409 for path in nx.all_simple_edge_paths(G, source, target):
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410 if len(path) == n - 1:
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411 yield path
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412
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413
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414 def test_hamiltonian__edge_path():
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415 from itertools import permutations
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416
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417 G = nx.complete_graph(4)
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418 paths = hamiltonian_edge_path(G, 0)
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419 exact = [list(pairwise([0] + list(p))) for p in permutations([1, 2, 3], 3)]
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420 assert sorted(exact) == [p for p in sorted(paths)]
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421
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422
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423 def test_edge_cutoff_zero():
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424 G = nx.complete_graph(4)
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425 paths = nx.all_simple_edge_paths(G, 0, 3, cutoff=0)
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426 assert list(list(p) for p in paths) == []
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427 paths = nx.all_simple_edge_paths(nx.MultiGraph(G), 0, 3, cutoff=0)
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428 assert list(list(p) for p in paths) == []
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429
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430
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431 def test_edge_source_missing():
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432 with pytest.raises(nx.NodeNotFound):
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433 G = nx.Graph()
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434 nx.add_path(G, [1, 2, 3])
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435 list(nx.all_simple_edge_paths(nx.MultiGraph(G), 0, 3))
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436
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437
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438 def test_edge_target_missing():
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439 with pytest.raises(nx.NodeNotFound):
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440 G = nx.Graph()
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441 nx.add_path(G, [1, 2, 3])
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442 list(nx.all_simple_edge_paths(nx.MultiGraph(G), 1, 4))
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443
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444
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445 # Tests for shortest_simple_paths
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446 def test_shortest_simple_paths():
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447 G = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
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448 paths = nx.shortest_simple_paths(G, 1, 12)
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449 assert next(paths) == [1, 2, 3, 4, 8, 12]
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450 assert next(paths) == [1, 5, 6, 7, 8, 12]
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451 assert [len(path) for path in nx.shortest_simple_paths(G, 1, 12)] == sorted(
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452 [len(path) for path in nx.all_simple_paths(G, 1, 12)]
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453 )
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454
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455
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456 def test_shortest_simple_paths_directed():
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457 G = nx.cycle_graph(7, create_using=nx.DiGraph())
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458 paths = nx.shortest_simple_paths(G, 0, 3)
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459 assert [path for path in paths] == [[0, 1, 2, 3]]
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460
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461
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462 def test_shortest_simple_paths_directed_with_weight_fucntion():
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463 def cost(u, v, x):
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464 return 1
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465
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466 G = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
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467 paths = nx.shortest_simple_paths(G, 1, 12)
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468 assert next(paths) == [1, 2, 3, 4, 8, 12]
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469 assert next(paths) == [1, 5, 6, 7, 8, 12]
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470 assert [
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471 len(path) for path in nx.shortest_simple_paths(G, 1, 12, weight=cost)
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472 ] == sorted([len(path) for path in nx.all_simple_paths(G, 1, 12)])
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473
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474
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475 def test_shortest_simple_paths_with_weight_fucntion():
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476 def cost(u, v, x):
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477 return 1
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478
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479 G = nx.cycle_graph(7, create_using=nx.DiGraph())
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480 paths = nx.shortest_simple_paths(G, 0, 3, weight=cost)
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481 assert [path for path in paths] == [[0, 1, 2, 3]]
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parents:
diff changeset
482
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parents:
diff changeset
483
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parents:
diff changeset
484 def test_Greg_Bernstein():
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parents:
diff changeset
485 g1 = nx.Graph()
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parents:
diff changeset
486 g1.add_nodes_from(["N0", "N1", "N2", "N3", "N4"])
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parents:
diff changeset
487 g1.add_edge("N4", "N1", weight=10.0, capacity=50, name="L5")
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parents:
diff changeset
488 g1.add_edge("N4", "N0", weight=7.0, capacity=40, name="L4")
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parents:
diff changeset
489 g1.add_edge("N0", "N1", weight=10.0, capacity=45, name="L1")
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parents:
diff changeset
490 g1.add_edge("N3", "N0", weight=10.0, capacity=50, name="L0")
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parents:
diff changeset
491 g1.add_edge("N2", "N3", weight=12.0, capacity=30, name="L2")
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parents:
diff changeset
492 g1.add_edge("N1", "N2", weight=15.0, capacity=42, name="L3")
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parents:
diff changeset
493 solution = [["N1", "N0", "N3"], ["N1", "N2", "N3"], ["N1", "N4", "N0", "N3"]]
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parents:
diff changeset
494 result = list(nx.shortest_simple_paths(g1, "N1", "N3", weight="weight"))
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parents:
diff changeset
495 assert result == solution
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parents:
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496
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parents:
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497
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parents:
diff changeset
498 def test_weighted_shortest_simple_path():
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parents:
diff changeset
499 def cost_func(path):
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parents:
diff changeset
500 return sum(G.adj[u][v]["weight"] for (u, v) in zip(path, path[1:]))
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parents:
diff changeset
501
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parents:
diff changeset
502 G = nx.complete_graph(5)
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parents:
diff changeset
503 weight = {(u, v): random.randint(1, 100) for (u, v) in G.edges()}
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parents:
diff changeset
504 nx.set_edge_attributes(G, weight, "weight")
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parents:
diff changeset
505 cost = 0
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parents:
diff changeset
506 for path in nx.shortest_simple_paths(G, 0, 3, weight="weight"):
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parents:
diff changeset
507 this_cost = cost_func(path)
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parents:
diff changeset
508 assert cost <= this_cost
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parents:
diff changeset
509 cost = this_cost
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parents:
diff changeset
510
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parents:
diff changeset
511
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parents:
diff changeset
512 def test_directed_weighted_shortest_simple_path():
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parents:
diff changeset
513 def cost_func(path):
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parents:
diff changeset
514 return sum(G.adj[u][v]["weight"] for (u, v) in zip(path, path[1:]))
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parents:
diff changeset
515
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parents:
diff changeset
516 G = nx.complete_graph(5)
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parents:
diff changeset
517 G = G.to_directed()
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parents:
diff changeset
518 weight = {(u, v): random.randint(1, 100) for (u, v) in G.edges()}
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parents:
diff changeset
519 nx.set_edge_attributes(G, weight, "weight")
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parents:
diff changeset
520 cost = 0
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parents:
diff changeset
521 for path in nx.shortest_simple_paths(G, 0, 3, weight="weight"):
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parents:
diff changeset
522 this_cost = cost_func(path)
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parents:
diff changeset
523 assert cost <= this_cost
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parents:
diff changeset
524 cost = this_cost
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parents:
diff changeset
525
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parents:
diff changeset
526
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parents:
diff changeset
527 def test_weighted_shortest_simple_path_issue2427():
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parents:
diff changeset
528 G = nx.Graph()
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parents:
diff changeset
529 G.add_edge("IN", "OUT", weight=2)
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parents:
diff changeset
530 G.add_edge("IN", "A", weight=1)
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shellac
parents:
diff changeset
531 G.add_edge("IN", "B", weight=2)
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shellac
parents:
diff changeset
532 G.add_edge("B", "OUT", weight=2)
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parents:
diff changeset
533 assert list(nx.shortest_simple_paths(G, "IN", "OUT", weight="weight")) == [
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parents:
diff changeset
534 ["IN", "OUT"],
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parents:
diff changeset
535 ["IN", "B", "OUT"],
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parents:
diff changeset
536 ]
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parents:
diff changeset
537 G = nx.Graph()
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parents:
diff changeset
538 G.add_edge("IN", "OUT", weight=10)
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shellac
parents:
diff changeset
539 G.add_edge("IN", "A", weight=1)
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parents:
diff changeset
540 G.add_edge("IN", "B", weight=1)
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parents:
diff changeset
541 G.add_edge("B", "OUT", weight=1)
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parents:
diff changeset
542 assert list(nx.shortest_simple_paths(G, "IN", "OUT", weight="weight")) == [
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parents:
diff changeset
543 ["IN", "B", "OUT"],
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parents:
diff changeset
544 ["IN", "OUT"],
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parents:
diff changeset
545 ]
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parents:
diff changeset
546
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parents:
diff changeset
547
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parents:
diff changeset
548 def test_directed_weighted_shortest_simple_path_issue2427():
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parents:
diff changeset
549 G = nx.DiGraph()
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parents:
diff changeset
550 G.add_edge("IN", "OUT", weight=2)
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shellac
parents:
diff changeset
551 G.add_edge("IN", "A", weight=1)
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shellac
parents:
diff changeset
552 G.add_edge("IN", "B", weight=2)
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shellac
parents:
diff changeset
553 G.add_edge("B", "OUT", weight=2)
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shellac
parents:
diff changeset
554 assert list(nx.shortest_simple_paths(G, "IN", "OUT", weight="weight")) == [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
555 ["IN", "OUT"],
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parents:
diff changeset
556 ["IN", "B", "OUT"],
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shellac
parents:
diff changeset
557 ]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
558 G = nx.DiGraph()
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parents:
diff changeset
559 G.add_edge("IN", "OUT", weight=10)
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shellac
parents:
diff changeset
560 G.add_edge("IN", "A", weight=1)
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shellac
parents:
diff changeset
561 G.add_edge("IN", "B", weight=1)
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shellac
parents:
diff changeset
562 G.add_edge("B", "OUT", weight=1)
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shellac
parents:
diff changeset
563 assert list(nx.shortest_simple_paths(G, "IN", "OUT", weight="weight")) == [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
564 ["IN", "B", "OUT"],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
565 ["IN", "OUT"],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
566 ]
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parents:
diff changeset
567
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
568
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
569 def test_weight_name():
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shellac
parents:
diff changeset
570 G = nx.cycle_graph(7)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
571 nx.set_edge_attributes(G, 1, "weight")
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shellac
parents:
diff changeset
572 nx.set_edge_attributes(G, 1, "foo")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
573 G.adj[1][2]["foo"] = 7
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shellac
parents:
diff changeset
574 paths = list(nx.shortest_simple_paths(G, 0, 3, weight="foo"))
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shellac
parents:
diff changeset
575 solution = [[0, 6, 5, 4, 3], [0, 1, 2, 3]]
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shellac
parents:
diff changeset
576 assert paths == solution
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shellac
parents:
diff changeset
577
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shellac
parents:
diff changeset
578
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
579 def test_ssp_source_missing():
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shellac
parents:
diff changeset
580 with pytest.raises(nx.NodeNotFound):
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shellac
parents:
diff changeset
581 G = nx.Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
582 nx.add_path(G, [1, 2, 3])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
583 list(nx.shortest_simple_paths(G, 0, 3))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
584
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
585
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
586 def test_ssp_target_missing():
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shellac
parents:
diff changeset
587 with pytest.raises(nx.NodeNotFound):
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shellac
parents:
diff changeset
588 G = nx.Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
589 nx.add_path(G, [1, 2, 3])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
590 list(nx.shortest_simple_paths(G, 1, 4))
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shellac
parents:
diff changeset
591
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
592
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
593 def test_ssp_multigraph():
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shellac
parents:
diff changeset
594 with pytest.raises(nx.NetworkXNotImplemented):
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shellac
parents:
diff changeset
595 G = nx.MultiGraph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
596 nx.add_path(G, [1, 2, 3])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
597 list(nx.shortest_simple_paths(G, 1, 4))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
598
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
599
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
600 def test_ssp_source_missing2():
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
601 with pytest.raises(nx.NetworkXNoPath):
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diff changeset
602 G = nx.Graph()
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diff changeset
603 nx.add_path(G, [0, 1, 2])
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diff changeset
604 nx.add_path(G, [3, 4, 5])
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parents:
diff changeset
605 list(nx.shortest_simple_paths(G, 0, 3))
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606
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607
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608 def test_bidirectional_shortest_path_restricted_cycle():
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diff changeset
609 cycle = nx.cycle_graph(7)
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diff changeset
610 length, path = _bidirectional_shortest_path(cycle, 0, 3)
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611 assert path == [0, 1, 2, 3]
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612 length, path = _bidirectional_shortest_path(cycle, 0, 3, ignore_nodes=[1])
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613 assert path == [0, 6, 5, 4, 3]
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614
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615
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616 def test_bidirectional_shortest_path_restricted_wheel():
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617 wheel = nx.wheel_graph(6)
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618 length, path = _bidirectional_shortest_path(wheel, 1, 3)
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619 assert path in [[1, 0, 3], [1, 2, 3]]
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620 length, path = _bidirectional_shortest_path(wheel, 1, 3, ignore_nodes=[0])
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621 assert path == [1, 2, 3]
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622 length, path = _bidirectional_shortest_path(wheel, 1, 3, ignore_nodes=[0, 2])
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623 assert path == [1, 5, 4, 3]
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624 length, path = _bidirectional_shortest_path(
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625 wheel, 1, 3, ignore_edges=[(1, 0), (5, 0), (2, 3)]
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626 )
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627 assert path in [[1, 2, 0, 3], [1, 5, 4, 3]]
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628
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629
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630 def test_bidirectional_shortest_path_restricted_directed_cycle():
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diff changeset
631 directed_cycle = nx.cycle_graph(7, create_using=nx.DiGraph())
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diff changeset
632 length, path = _bidirectional_shortest_path(directed_cycle, 0, 3)
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633 assert path == [0, 1, 2, 3]
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diff changeset
634 pytest.raises(
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parents:
diff changeset
635 nx.NetworkXNoPath,
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diff changeset
636 _bidirectional_shortest_path,
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parents:
diff changeset
637 directed_cycle,
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diff changeset
638 0,
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diff changeset
639 3,
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diff changeset
640 ignore_nodes=[1],
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diff changeset
641 )
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diff changeset
642 length, path = _bidirectional_shortest_path(
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diff changeset
643 directed_cycle, 0, 3, ignore_edges=[(2, 1)]
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644 )
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diff changeset
645 assert path == [0, 1, 2, 3]
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diff changeset
646 pytest.raises(
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parents:
diff changeset
647 nx.NetworkXNoPath,
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diff changeset
648 _bidirectional_shortest_path,
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parents:
diff changeset
649 directed_cycle,
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diff changeset
650 0,
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diff changeset
651 3,
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diff changeset
652 ignore_edges=[(1, 2)],
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653 )
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diff changeset
654
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655
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656 def test_bidirectional_shortest_path_ignore():
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diff changeset
657 G = nx.Graph()
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diff changeset
658 nx.add_path(G, [1, 2])
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diff changeset
659 nx.add_path(G, [1, 3])
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parents:
diff changeset
660 nx.add_path(G, [1, 4])
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diff changeset
661 pytest.raises(
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diff changeset
662 nx.NetworkXNoPath, _bidirectional_shortest_path, G, 1, 2, ignore_nodes=[1]
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diff changeset
663 )
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diff changeset
664 pytest.raises(
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parents:
diff changeset
665 nx.NetworkXNoPath, _bidirectional_shortest_path, G, 1, 2, ignore_nodes=[2]
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666 )
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diff changeset
667 G = nx.Graph()
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parents:
diff changeset
668 nx.add_path(G, [1, 3])
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parents:
diff changeset
669 nx.add_path(G, [1, 4])
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diff changeset
670 nx.add_path(G, [3, 2])
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parents:
diff changeset
671 pytest.raises(
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parents:
diff changeset
672 nx.NetworkXNoPath, _bidirectional_shortest_path, G, 1, 2, ignore_nodes=[1, 2]
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diff changeset
673 )
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diff changeset
674
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675
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diff changeset
676 def validate_path(G, s, t, soln_len, path):
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parents:
diff changeset
677 assert path[0] == s
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parents:
diff changeset
678 assert path[-1] == t
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parents:
diff changeset
679 assert soln_len == sum(
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diff changeset
680 G[u][v].get("weight", 1) for u, v in zip(path[:-1], path[1:])
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diff changeset
681 )
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682
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683
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diff changeset
684 def validate_length_path(G, s, t, soln_len, length, path):
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parents:
diff changeset
685 assert soln_len == length
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diff changeset
686 validate_path(G, s, t, length, path)
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diff changeset
687
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688
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diff changeset
689 def test_bidirectional_dijksta_restricted():
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diff changeset
690 XG = nx.DiGraph()
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parents:
diff changeset
691 XG.add_weighted_edges_from(
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parents:
diff changeset
692 [
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diff changeset
693 ("s", "u", 10),
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diff changeset
694 ("s", "x", 5),
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parents:
diff changeset
695 ("u", "v", 1),
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parents:
diff changeset
696 ("u", "x", 2),
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parents:
diff changeset
697 ("v", "y", 1),
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parents:
diff changeset
698 ("x", "u", 3),
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diff changeset
699 ("x", "v", 5),
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parents:
diff changeset
700 ("x", "y", 2),
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parents:
diff changeset
701 ("y", "s", 7),
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parents:
diff changeset
702 ("y", "v", 6),
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703 ]
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704 )
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705
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diff changeset
706 XG3 = nx.Graph()
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parents:
diff changeset
707 XG3.add_weighted_edges_from(
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parents:
diff changeset
708 [[0, 1, 2], [1, 2, 12], [2, 3, 1], [3, 4, 5], [4, 5, 1], [5, 0, 10]]
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diff changeset
709 )
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diff changeset
710 validate_length_path(XG, "s", "v", 9, *_bidirectional_dijkstra(XG, "s", "v"))
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parents:
diff changeset
711 validate_length_path(
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diff changeset
712 XG, "s", "v", 10, *_bidirectional_dijkstra(XG, "s", "v", ignore_nodes=["u"])
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parents:
diff changeset
713 )
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parents:
diff changeset
714 validate_length_path(
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parents:
diff changeset
715 XG,
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parents:
diff changeset
716 "s",
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parents:
diff changeset
717 "v",
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diff changeset
718 11,
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diff changeset
719 *_bidirectional_dijkstra(XG, "s", "v", ignore_edges=[("s", "x")])
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720 )
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parents:
diff changeset
721 pytest.raises(
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parents:
diff changeset
722 nx.NetworkXNoPath,
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parents:
diff changeset
723 _bidirectional_dijkstra,
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diff changeset
724 XG,
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parents:
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725 "s",
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726 "v",
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727 ignore_nodes=["u"],
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728 ignore_edges=[("s", "x")],
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729 )
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730 validate_length_path(XG3, 0, 3, 15, *_bidirectional_dijkstra(XG3, 0, 3))
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731 validate_length_path(
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732 XG3, 0, 3, 16, *_bidirectional_dijkstra(XG3, 0, 3, ignore_nodes=[1])
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733 )
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734 validate_length_path(
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735 XG3, 0, 3, 16, *_bidirectional_dijkstra(XG3, 0, 3, ignore_edges=[(2, 3)])
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736 )
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737 pytest.raises(
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738 nx.NetworkXNoPath,
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739 _bidirectional_dijkstra,
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740 XG3,
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741 0,
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742 3,
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743 ignore_nodes=[1],
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744 ignore_edges=[(5, 4)],
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745 )
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746
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747
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748 def test_bidirectional_dijkstra_no_path():
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749 with pytest.raises(nx.NetworkXNoPath):
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750 G = nx.Graph()
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751 nx.add_path(G, [1, 2, 3])
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752 nx.add_path(G, [4, 5, 6])
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753 _bidirectional_dijkstra(G, 1, 6)
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754
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755
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756 def test_bidirectional_dijkstra_ignore():
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757 G = nx.Graph()
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758 nx.add_path(G, [1, 2, 10])
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759 nx.add_path(G, [1, 3, 10])
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760 pytest.raises(nx.NetworkXNoPath, _bidirectional_dijkstra, G, 1, 2, ignore_nodes=[1])
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761 pytest.raises(nx.NetworkXNoPath, _bidirectional_dijkstra, G, 1, 2, ignore_nodes=[2])
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762 pytest.raises(
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763 nx.NetworkXNoPath, _bidirectional_dijkstra, G, 1, 2, ignore_nodes=[1, 2]
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764 )