Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/planemo/commands/cmd_config_init.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """Module describing the planemo ``config_init`` command.""" |
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2 import os |
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3 import sys |
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4 |
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5 import click |
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6 |
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7 from planemo import config |
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8 from planemo import options |
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9 from planemo.cli import command_function |
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10 from planemo.io import info, warn |
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11 |
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12 CONFIG_TEMPLATE = """## Planemo Global Configuration File. |
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13 ## Everything in this file is completely optional - these values can all be |
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14 ## configured via command line options for the corresponding commands. |
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15 |
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16 ## Specify a default galaxy_root for test and server commands here. |
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17 #galaxy_root: /path/to/galaxy_root |
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18 ## Username used with toolshed(s). |
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19 #shed_username: "<TODO>" |
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20 sheds: |
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21 # For each tool shed you wish to target, uncomment key or both email and |
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22 # password. |
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23 toolshed: |
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24 #key: "<TODO>" |
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25 #email: "<TODO>" |
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26 #password: "<TODO>" |
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27 testtoolshed: |
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28 #key: "<TODO>" |
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29 #email: "<TODO>" |
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30 #password: "<TODO>" |
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31 local: |
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32 #key: "<TODO>" |
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33 #email: "<TODO>" |
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34 #password: "<TODO>" |
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35 """ |
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36 SUCCESS_MESSAGE = ( |
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37 "Wrote configuration template to %s, " |
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38 "please open with editor and fill out." |
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39 ) |
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40 |
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41 |
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42 @click.command("config_init") |
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43 @options.optional_project_arg(exists=None) |
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44 @click.option( |
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45 '--template', |
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46 default=None |
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47 ) |
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48 @command_function |
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49 def cli(ctx, path, template=None, **kwds): |
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50 """Initialise global configuration for Planemo. |
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51 |
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52 Helps initialize global configuration (in home directory) for Planemo. |
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53 """ |
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54 # TODO: prompt for values someday. |
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55 config_path = config.global_config_path() |
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56 if os.path.exists(config_path): |
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57 warn("File %s already exists, exiting." % config_path) |
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58 sys.exit(1) |
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59 with open(config_path, "w") as f: |
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60 f.write(CONFIG_TEMPLATE) |
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61 info(SUCCESS_MESSAGE % config_path) |