Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/planemo/database/factory.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 """Create a DatabaseSource from supplied planemo configuration.""" |
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2 from galaxy.tool_util.deps.commands import which |
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3 |
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4 from .postgres import LocalPostgresDatabaseSource |
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5 from .postgres_docker import DockerPostgresDatabaseSource |
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6 |
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7 |
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8 def create_database_source(**kwds): |
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9 """Return a :class:`planemo.database.DatabaseSource` for configuration.""" |
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10 database_type = kwds.get("database_type", "auto") |
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11 if database_type == "auto": |
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12 if which("psql"): |
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13 database_type = "postgres" |
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14 elif which("docker"): |
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15 database_type = "postgres_docker" |
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16 else: |
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17 raise Exception("Cannot find executables for psql or docker, cannot configure a database source.") |
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18 |
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19 if database_type == "postgres": |
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20 return LocalPostgresDatabaseSource(**kwds) |
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21 elif database_type == "postgres_docker": |
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22 return DockerPostgresDatabaseSource(**kwds) |
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23 # TODO |
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24 # from .sqlite import SqliteDatabaseSource |
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25 # elif database_type == "sqlite": |
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26 # return SqliteDatabaseSource(**kwds) |
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27 else: |
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28 raise Exception("Unknown database type [%s]." % database_type) |
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29 |
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30 |
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31 __all__ = ( |
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32 "create_database_source", |
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33 ) |