Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/planemo/github_util.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """Utilities for interacting with Github.""" |
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2 from __future__ import absolute_import |
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3 |
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4 import io |
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5 import os |
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6 import stat |
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7 import tarfile |
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8 import tempfile |
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9 from distutils.dir_util import copy_tree |
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10 from pathlib import Path |
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11 |
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12 import requests |
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13 |
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14 from planemo import git |
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15 from planemo.io import ( |
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16 communicate, |
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17 IS_OS_X, |
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18 ) |
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19 |
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20 try: |
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21 import github |
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22 has_github_lib = True |
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23 except ImportError: |
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24 github = None |
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25 has_github_lib = False |
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26 |
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27 GH_VERSION = "1.5.0" |
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28 |
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29 NO_GITHUB_DEP_ERROR = ("Cannot use github functionality - " |
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30 "PyGithub library not available.") |
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31 FAILED_TO_DOWNLOAD_GH = "No gh executable available and it could not be installed." |
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32 DEFAULT_REMOTE_NAME = 'planemo-remote' |
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33 |
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34 |
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35 def get_github_config(ctx, allow_anonymous=False): |
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36 """Return a :class:`planemo.github_util.GithubConfig` for given configuration.""" |
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37 global_github_config = _get_raw_github_config(ctx) |
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38 return GithubConfig(global_github_config, allow_anonymous=allow_anonymous) |
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39 |
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40 |
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41 def clone_fork_branch(ctx, target, path, remote_name=DEFAULT_REMOTE_NAME, **kwds): |
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42 """Clone, fork, and branch a repository ahead of building a pull request.""" |
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43 git.checkout( |
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44 ctx, |
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45 target, |
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46 path, |
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47 branch=kwds.get("branch", None), |
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48 remote="origin", |
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49 from_branch="master" |
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50 ) |
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51 if kwds.get("fork"): |
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52 try: |
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53 fork(ctx, path, remote_name=remote_name, **kwds) |
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54 except Exception: |
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55 pass |
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56 if 'GITHUB_USER' in os.environ: |
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57 # On CI systems fork doesn't add a local remote under circumstances I don't quite understand, |
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58 # but that's probably linked to https://github.com/cli/cli/issues/2722 |
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59 cmd = ['git', 'remote', 'add', remote_name, f"https://github.com/{os.environ['GITHUB_USER']}/{os.path.basename(target)}"] |
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60 try: |
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61 communicate(cmd, cwd=path) |
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62 except RuntimeError: |
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63 # Can add the remote only once |
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64 pass |
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65 return remote_name |
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66 |
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67 |
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68 def fork(ctx, path, remote_name=DEFAULT_REMOTE_NAME, **kwds): |
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69 """Fork the target repository using ``gh``.""" |
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70 gh_path = ensure_gh(ctx, **kwds) |
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71 gh_env = get_gh_env(ctx, path, **kwds) |
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72 cmd = [gh_path, "repo", "fork", '--remote=true', '--remote-name', remote_name] |
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73 communicate(cmd, cwd=path, env=gh_env) |
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74 return remote_name |
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75 |
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76 |
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77 def get_or_create_repository(ctx, owner, repo, dry_run=True, **kwds): |
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78 """Clones or creates a repository and returns path on disk""" |
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79 target = os.path.realpath(tempfile.mkdtemp()) |
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80 remote_repo = "https://github.com/{owner}/{repo}".format(owner=owner, repo=repo) |
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81 try: |
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82 ctx.log('Cloning {}'.format(remote_repo)) |
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83 git.clone(ctx, src=remote_repo, dest=target) |
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84 except Exception: |
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85 ctx.log('Creating repository {}'.format(remote_repo)) |
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86 target = create_repository(ctx, owner=owner, repo=repo, dest=target, dry_run=dry_run) |
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87 return target |
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88 |
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89 |
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90 def create_repository(ctx, owner, repo, dest, dry_run, **kwds): |
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91 gh_path = ensure_gh(ctx, **kwds) |
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92 gh_env = get_gh_env(ctx, dry_run=dry_run, **kwds) |
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93 cmd = [gh_path, 'repo', 'create', '-y', '--public', "{owner}/{repo}".format(owner=owner, repo=repo)] |
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94 if dry_run: |
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95 "Would run command '{}'".format(" ".join(cmd)) |
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96 git.init(ctx, dest) |
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97 return dest |
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98 communicate(cmd, env=gh_env, cwd=dest) |
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99 return os.path.join(dest, repo) |
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100 |
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101 |
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102 def rm_dir_contents(directory, ignore_dirs=(".git")): |
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103 directory = Path(directory) |
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104 for item in directory.iterdir(): |
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105 if item.name not in ignore_dirs: |
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106 if item.is_dir(): |
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107 rm_dir_contents(item) |
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108 else: |
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109 item.unlink() |
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110 |
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111 |
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112 def add_dir_contents_to_repo(ctx, from_dir, target_dir, target_repository_path, version, dry_run, notes=""): |
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113 ctx.log("From {} to {}".format(from_dir, target_repository_path)) |
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114 rm_dir_contents(target_repository_path) |
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115 copy_tree(from_dir, target_repository_path) |
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116 git.add(ctx, target_repository_path, target_repository_path) |
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117 message = "Update for version {version}".format(version=version) |
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118 if notes: |
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119 message += "\n{notes}".format(notes=notes) |
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120 git.commit(ctx, repo_path=target_repository_path, message=message) |
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121 if not dry_run: |
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122 git.push(ctx, target_repository_path) |
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123 |
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124 |
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125 def assert_new_version(ctx, version, owner, repo): |
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126 remote_repo = "https://github.com/{owner}/{repo}".format(owner=owner, repo=repo) |
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127 try: |
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128 tags_and_versions = git.ls_remote(ctx, remote_repo=remote_repo) |
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129 if "refs/tags/v{}".format(version) in tags_and_versions or "refs/tags/{}".format(version) in tags_and_versions: |
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130 raise Exception("Version '{}' for {}/{} exists already. Please change the version.".format(version, owner, repo)) |
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131 except RuntimeError: |
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132 # repo doesn't exist |
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133 pass |
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134 |
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135 |
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136 def changelog_in_repo(target_repository_path): |
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137 changelog = [] |
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138 for path in os.listdir(target_repository_path): |
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139 if 'changelog.md' in path.lower(): |
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140 header_seen = False |
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141 header_chars = ('---', '===', '~~~') |
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142 with(open(os.path.join(target_repository_path, path))) as changelog_fh: |
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143 for line in changelog_fh: |
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144 if line.startswith(header_chars): |
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145 if header_seen: |
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146 return "\n".join(changelog[:-1]) |
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147 else: |
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148 header_seen = True |
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149 return "\n".join(changelog) |
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150 |
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151 |
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152 def create_release(ctx, from_dir, target_dir, owner, repo, version, dry_run, notes="", **kwds): |
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153 assert_new_version(ctx, version, owner=owner, repo=repo) |
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154 target_repository_path = get_or_create_repository(ctx, owner=owner, repo=repo, dry_run=dry_run) |
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155 add_dir_contents_to_repo(ctx, from_dir, target_dir, target_repository_path, version=version, dry_run=dry_run, notes=notes) |
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156 gh_path = ensure_gh(ctx, **kwds) |
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157 gh_env = get_gh_env(ctx, dry_run=dry_run, **kwds) |
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158 cmd = [ |
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159 gh_path, |
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160 'release', |
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161 '-R', |
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162 "{}/{}".format(owner, repo), |
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163 'create', |
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164 "v{version}".format(version=version), |
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165 '--title', |
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166 str(version), |
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167 ] |
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168 cmd.extend(['--notes', notes or changelog_in_repo(target_repository_path)]) |
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169 if not dry_run: |
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170 communicate(cmd, env=gh_env) |
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171 else: |
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172 ctx.log("Would run command '{}'".format(" ".join(cmd))) |
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173 |
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174 |
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175 def pull_request(ctx, path, message=None, repo=None, **kwds): |
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176 """Create a pull request against the origin of the path using ``gh``.""" |
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177 gh_path = ensure_gh(ctx, **kwds) |
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178 gh_env = get_gh_env(ctx, path, **kwds) |
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179 cmd = [gh_path, "pr", "create"] |
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180 if message is None: |
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181 cmd.append('--fill') |
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182 else: |
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183 lines = message.splitlines() |
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184 cmd.extend(['--title', lines[0]]) |
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185 if len(lines) > 1: |
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186 cmd.extend(["--body", "\n".join(lines[1:])]) |
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187 if repo: |
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188 cmd.extend(['--repo', repo]) |
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189 communicate(cmd, env=gh_env) |
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190 |
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191 |
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192 def get_gh_env(ctx, path=None, dry_run=False, **kwds): |
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193 """Return a environment dictionary to run gh with given user and repository target.""" |
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194 if path is None: |
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195 env = {} |
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196 else: |
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197 env = git.git_env_for(path).copy() |
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198 if not dry_run: |
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199 github_config = _get_raw_github_config(ctx) |
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200 if github_config is not None: |
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201 if "access_token" in github_config: |
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202 env["GITHUB_TOKEN"] = github_config["access_token"] |
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203 |
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204 return env |
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205 |
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206 |
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207 def ensure_gh(ctx, **kwds): |
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208 """Ensure gh is available for planemo |
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209 |
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210 This method will ensure ``gh`` is installed at the correct version. |
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211 |
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212 For more information on ``gh`` checkout https://cli.github.com/ |
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213 """ |
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214 planemo_gh_path = os.path.join(ctx.workspace, f"gh-{GH_VERSION}") |
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215 if not os.path.exists(planemo_gh_path): |
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216 _try_download_gh(planemo_gh_path) |
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217 |
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218 if not os.path.exists(planemo_gh_path): |
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219 raise Exception(FAILED_TO_DOWNLOAD_GH) |
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220 |
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221 return planemo_gh_path |
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222 |
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223 |
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224 def _try_download_gh(planemo_gh_path): |
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225 link = _gh_link() |
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226 path = Path(planemo_gh_path) |
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227 resp = requests.get(link) |
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228 with tarfile.open(fileobj=io.BytesIO(resp.content)) as tf, path.open('wb') as outfile: |
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229 for member in tf.getmembers(): |
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230 if member.name.endswith('bin/gh'): |
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231 outfile.write(tf.extractfile(member).read()) |
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232 path.chmod(path.stat().st_mode | stat.S_IEXEC) |
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233 |
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234 |
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235 def _get_raw_github_config(ctx): |
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236 """Return a :class:`planemo.github_util.GithubConfig` for given configuration.""" |
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237 if "github" not in ctx.global_config: |
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238 if "GITHUB_TOKEN" in os.environ: |
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239 return { |
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240 "access_token": os.environ["GITHUB_TOKEN"], |
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241 } |
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242 if "github" not in ctx.global_config: |
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243 raise Exception("github account not found in planemo config and GITHUB_TOKEN environment variables unset") |
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244 return ctx.global_config["github"] |
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245 |
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246 |
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247 class GithubConfig(object): |
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248 """Abstraction around a Github account. |
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249 |
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250 Required to use ``github`` module methods that require authorization. |
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251 """ |
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252 |
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253 def __init__(self, config, allow_anonymous=False): |
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254 if not has_github_lib: |
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255 raise Exception(NO_GITHUB_DEP_ERROR) |
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256 if "access_token" not in config: |
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257 if not allow_anonymous: |
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258 raise Exception("github authentication unavailable") |
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259 github_object = github.Github() |
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260 else: |
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261 github_object = github.Github(config["access_token"]) |
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262 self._github = github_object |
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263 |
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264 |
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265 def _gh_link(): |
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266 if IS_OS_X: |
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267 template_link = "https://github.com/cli/cli/releases/download/v%s/gh_%s_macOS_amd64.tar.gz" |
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268 else: |
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269 template_link = "https://github.com/cli/cli/releases/download/v%s/gh_%s_linux_amd64.tar.gz" |
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270 return template_link % (GH_VERSION, GH_VERSION) |
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271 |
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272 |
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273 def publish_as_gist_file(ctx, path, name="index"): |
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274 """Publish a gist. |
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275 |
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276 More information on gists at http://gist.github.com/. |
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277 """ |
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278 github_config = get_github_config(ctx, allow_anonymous=False) |
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279 user = github_config._github.get_user() |
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280 with open(path, "r") as fh: |
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281 content = fh.read() |
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282 content_file = github.InputFileContent(content) |
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283 gist = user.create_gist(False, {name: content_file}) |
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284 return gist.files[name].raw_url |
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285 |
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286 |
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287 def get_repository_object(ctx, name): |
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288 github_object = get_github_config(ctx, allow_anonymous=True) |
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289 return github_object._github.get_repo(name) |
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290 |
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291 |
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292 __all__ = ( |
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293 "add_dir_contents_to_repo", |
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294 "clone_fork_branch", |
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295 "create_release", |
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296 "ensure_gh", |
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297 "fork", |
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298 "get_github_config", |
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299 "get_gh_env", |
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300 "get_or_create_repository", |
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301 "publish_as_gist_file", |
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302 ) |