- from: R
  to: r-base
- from: blast+
  to: blast
- from:
    name: samtools
    unversioned: true
  to:
    name: samtools
    version: 1.3.1
- from:
    name: ucsc_tools
    unversioned: true
  to:
    name: ucsc_tools
    version: 357
- from:
    name: bedtools
    unversioned: true
  to:
    name: bedtools
    version: 2.26.0gx
- from:
    name: gnuplot
    unversioned: true
  to:
    name: gnuplot
    version: 4.6
- from:
    name: openbabel
    unversioned: true
  to:
    name: openbabel
    version: 2.3.2
- from:
    name: gnuplot-py
    unversioned: true
  to:
    name: gnuplot-py
    version: 1.8
- from:
    name: bowtie
    unversioned: true
  to:
    name: bowtie
    version: 1.2.0
