comparison env/bin/fetch_file @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

0:4f3585e2f14b

#!/Users/cmdms/OneDrive-UOB/Development/Projects/2021/sam-consensus-v3/env/bin/python3
# Copyright (c) 2009 Chris Moyer http://coredumped.org
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge, publish, dis-
# tribute, sublicense, and/or sell copies of the Software, and to permit
# persons to whom the Software is furnished to do so, subject to the fol-
# lowing conditions:
#
# The above copyright notice and this permission notice shall be included
# in all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
# IN THE SOFTWARE.
#
import sys


if __name__ == "__main__":
    from optparse import OptionParser
    usage = """%prog [options] URI
Fetch a URI using the boto library and (by default) pipe contents to STDOUT
The URI can be either an HTTP URL, or "s3://bucket_name/key_name"
"""
    parser = OptionParser(version="0.1", usage=usage)
    parser.add_option("-o", "--out-file",
                      help="File to receive output instead of STDOUT",
                      dest="outfile")

    (options, args) = parser.parse_args()
    if len(args) < 1:
        parser.print_help()
        sys.exit(1)
    from boto.utils import fetch_file
    f = fetch_file(args[0])
    if options.outfile:
        open(options.outfile, "w").write(f.read())
    else:
        print(f.read())