Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/cwltool/tests/secondary-files.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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-1:000000000000 | 0:4f3585e2f14b |
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1 #!/usr/bin/env cwl-runner | |
2 | |
3 cwlVersion: v1.1.0-dev1 | |
4 | |
5 requirements: | |
6 - class: InlineJavascriptRequirement | |
7 - class: ShellCommandRequirement | |
8 | |
9 class: CommandLineTool | |
10 | |
11 inputs: | |
12 fasta_path: | |
13 type: File | |
14 secondaryFiles: | |
15 - pattern: ^.fastq | |
16 required: true | |
17 - pattern: .crai | |
18 required: false | |
19 - .bai? | |
20 - pattern: "${ return null }" | |
21 | |
22 outputs: | |
23 bai_list: | |
24 type: File | |
25 outputBinding: | |
26 glob: lsout | |
27 secondaryFiles: | |
28 - .bai? | |
29 - pattern: "${ return null }" | |
30 - pattern: .crai | |
31 required: false | |
32 - pattern: .idx | |
33 | |
34 baseCommand: ["ls"] | |
35 | |
36 stdout: lsout |