Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/cwltool/tests/seqtk_seq_with_docker.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
| author | shellac |
|---|---|
| date | Mon, 22 Mar 2021 18:12:50 +0000 |
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| children |
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| -1:000000000000 | 0:4f3585e2f14b |
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| 1 #!/usr/bin/env cwl-runner | |
| 2 cwlVersion: v1.0 | |
| 3 class: CommandLineTool | |
| 4 id: "seqtk_seq" | |
| 5 doc: "Convert to FASTA (seqtk)" | |
| 6 inputs: | |
| 7 - id: input1 | |
| 8 type: File | |
| 9 inputBinding: | |
| 10 position: 1 | |
| 11 prefix: "-a" | |
| 12 outputs: | |
| 13 - id: output1 | |
| 14 type: File | |
| 15 outputBinding: | |
| 16 glob: out | |
| 17 baseCommand: ["seqtk", "seq"] | |
| 18 arguments: [] | |
| 19 stdout: out | |
| 20 hints: | |
| 21 SoftwareRequirement: | |
| 22 packages: | |
| 23 - package: seqtk | |
| 24 version: | |
| 25 - '1.2' | |
| 26 DockerRequirement: | |
| 27 dockerPull: quay.io/biocontainers/seqtk:1.2--0 |