Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/cwltool/tests/test_http_input.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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-1:000000000000 | 0:4f3585e2f14b |
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1 import os | |
2 from pathlib import Path | |
3 from typing import List | |
4 | |
5 from cwltool.pathmapper import PathMapper | |
6 from cwltool.utils import CWLObjectType | |
7 | |
8 | |
9 def test_http_path_mapping(tmp_path: Path) -> None: | |
10 | |
11 input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta" | |
12 base_file: List[CWLObjectType] = [ | |
13 { | |
14 "class": "File", | |
15 "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta", | |
16 "basename": "chr20.fa", | |
17 } | |
18 ] | |
19 pathmap = PathMapper(base_file, os.getcwd(), str(tmp_path))._pathmap | |
20 | |
21 assert input_file_path in pathmap | |
22 assert os.path.exists(pathmap[input_file_path].resolved) | |
23 | |
24 with open(pathmap[input_file_path].resolved) as file: | |
25 contents = file.read() | |
26 | |
27 assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents |