Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/cwltool/tests/wf/sorttool.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 #!/usr/bin/env cwl-runner | |
2 # Example command line program wrapper for the Unix tool "sort" | |
3 # demonstrating command line flags. | |
4 class: CommandLineTool | |
5 doc: "Sort lines using the `sort` command" | |
6 cwlVersion: v1.0 | |
7 | |
8 # This example is similar to the previous one, with an additional input | |
9 # parameter called "reverse". It is a boolean parameter, which is | |
10 # intepreted as a command line flag. The value of "prefix" is used for | |
11 # flag to put on the command line if "reverse" is true, if "reverse" is | |
12 # false, no flag is added. | |
13 # | |
14 # This example also introduced the "position" field. This indicates the | |
15 # sorting order of items on the command line. Lower numbers are placed | |
16 # before higher numbers. Here, the "--reverse" flag (if present) will be | |
17 # added to the command line before the input file path. | |
18 inputs: | |
19 - id: reverse | |
20 type: boolean | |
21 inputBinding: | |
22 position: 1 | |
23 prefix: "--reverse" | |
24 - id: sorted_input | |
25 type: File | |
26 inputBinding: | |
27 position: 2 | |
28 | |
29 outputs: | |
30 - id: sorted_output | |
31 type: File | |
32 outputBinding: | |
33 glob: output.txt | |
34 | |
35 baseCommand: sort | |
36 stdout: output.txt |