Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/galaxy/tool_util/fetcher.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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-1:000000000000 | 0:4f3585e2f14b |
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1 from galaxy.util import plugin_config | |
2 | |
3 | |
4 class ToolLocationFetcher: | |
5 | |
6 def __init__(self): | |
7 self.resolver_classes = self.__resolvers_dict() | |
8 | |
9 def __resolvers_dict(self): | |
10 import galaxy.tool_util.locations | |
11 return plugin_config.plugins_dict(galaxy.tool_util.locations, 'scheme') | |
12 | |
13 def to_tool_path(self, path_or_uri_like, **kwds): | |
14 if "://" not in path_or_uri_like: | |
15 path = path_or_uri_like | |
16 else: | |
17 uri_like = path_or_uri_like | |
18 if ":" not in path_or_uri_like: | |
19 raise Exception("Invalid URI passed to get_tool_source") | |
20 scheme, rest = uri_like.split(":", 2) | |
21 if scheme not in self.resolver_classes: | |
22 raise Exception(f"Unknown tool scheme [{scheme}] for URI [{uri_like}]") | |
23 path = self.resolver_classes[scheme]().get_tool_source_path(uri_like) | |
24 | |
25 return path |