comparison env/lib/python3.9/site-packages/networkx/algorithms/community/tests/test_kclique.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

0:4f3585e2f14b

from itertools import combinations

import pytest

import networkx as nx
from networkx.algorithms.community import k_clique_communities


def test_overlapping_K5():
    G = nx.Graph()
    G.add_edges_from(combinations(range(5), 2))  # Add a five clique
    G.add_edges_from(combinations(range(2, 7), 2))  # Add another five clique
    c = list(k_clique_communities(G, 4))
    assert c == [frozenset(range(7))]
    c = set(k_clique_communities(G, 5))
    assert c == {frozenset(range(5)), frozenset(range(2, 7))}


def test_isolated_K5():
    G = nx.Graph()
    G.add_edges_from(combinations(range(0, 5), 2))  # Add a five clique
    G.add_edges_from(combinations(range(5, 10), 2))  # Add another five clique
    c = set(k_clique_communities(G, 5))
    assert c == {frozenset(range(5)), frozenset(range(5, 10))}


class TestZacharyKarateClub:
    def setup(self):
        self.G = nx.karate_club_graph()

    def _check_communities(self, k, expected):
        communities = set(k_clique_communities(self.G, k))
        assert communities == expected

    def test_k2(self):
        # clique percolation with k=2 is just connected components
        expected = {frozenset(self.G)}
        self._check_communities(2, expected)

    def test_k3(self):
        comm1 = [
            0,
            1,
            2,
            3,
            7,
            8,
            12,
            13,
            14,
            15,
            17,
            18,
            19,
            20,
            21,
            22,
            23,
            26,
            27,
            28,
            29,
            30,
            31,
            32,
            33,
        ]
        comm2 = [0, 4, 5, 6, 10, 16]
        comm3 = [24, 25, 31]
        expected = {frozenset(comm1), frozenset(comm2), frozenset(comm3)}
        self._check_communities(3, expected)

    def test_k4(self):
        expected = {
            frozenset([0, 1, 2, 3, 7, 13]),
            frozenset([8, 32, 30, 33]),
            frozenset([32, 33, 29, 23]),
        }
        self._check_communities(4, expected)

    def test_k5(self):
        expected = {frozenset([0, 1, 2, 3, 7, 13])}
        self._check_communities(5, expected)

    def test_k6(self):
        expected = set()
        self._check_communities(6, expected)


def test_bad_k():
    with pytest.raises(nx.NetworkXError):
        list(k_clique_communities(nx.Graph(), 1))