comparison env/lib/python3.9/site-packages/networkx/algorithms/connectivity/tests/test_kcomponents.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

0:4f3585e2f14b

# Test for Moody and White k-components algorithm
import pytest
import networkx as nx
from networkx.algorithms.connectivity.kcomponents import (
    build_k_number_dict,
    _consolidate,
)

##
# A nice synthetic graph
##


def torrents_and_ferraro_graph():
    # Graph from https://arxiv.org/pdf/1503.04476v1 p.26
    G = nx.convert_node_labels_to_integers(
        nx.grid_graph([5, 5]), label_attribute="labels"
    )
    rlabels = nx.get_node_attributes(G, "labels")
    labels = {v: k for k, v in rlabels.items()}

    for nodes in [(labels[(0, 4)], labels[(1, 4)]), (labels[(3, 4)], labels[(4, 4)])]:
        new_node = G.order() + 1
        # Petersen graph is triconnected
        P = nx.petersen_graph()
        G = nx.disjoint_union(G, P)
        # Add two edges between the grid and P
        G.add_edge(new_node + 1, nodes[0])
        G.add_edge(new_node, nodes[1])
        # K5 is 4-connected
        K = nx.complete_graph(5)
        G = nx.disjoint_union(G, K)
        # Add three edges between P and K5
        G.add_edge(new_node + 2, new_node + 11)
        G.add_edge(new_node + 3, new_node + 12)
        G.add_edge(new_node + 4, new_node + 13)
        # Add another K5 sharing a node
        G = nx.disjoint_union(G, K)
        nbrs = G[new_node + 10]
        G.remove_node(new_node + 10)
        for nbr in nbrs:
            G.add_edge(new_node + 17, nbr)
        # This edge makes the graph biconnected; it's
        # needed because K5s share only one node.
        G.add_edge(new_node + 16, new_node + 8)

    for nodes in [(labels[(0, 0)], labels[(1, 0)]), (labels[(3, 0)], labels[(4, 0)])]:
        new_node = G.order() + 1
        # Petersen graph is triconnected
        P = nx.petersen_graph()
        G = nx.disjoint_union(G, P)
        # Add two edges between the grid and P
        G.add_edge(new_node + 1, nodes[0])
        G.add_edge(new_node, nodes[1])
        # K5 is 4-connected
        K = nx.complete_graph(5)
        G = nx.disjoint_union(G, K)
        # Add three edges between P and K5
        G.add_edge(new_node + 2, new_node + 11)
        G.add_edge(new_node + 3, new_node + 12)
        G.add_edge(new_node + 4, new_node + 13)
        # Add another K5 sharing two nodes
        G = nx.disjoint_union(G, K)
        nbrs = G[new_node + 10]
        G.remove_node(new_node + 10)
        for nbr in nbrs:
            G.add_edge(new_node + 17, nbr)
        nbrs2 = G[new_node + 9]
        G.remove_node(new_node + 9)
        for nbr in nbrs2:
            G.add_edge(new_node + 18, nbr)
    return G


def test_directed():
    with pytest.raises(nx.NetworkXNotImplemented):
        G = nx.gnp_random_graph(10, 0.2, directed=True, seed=42)
        nx.k_components(G)


# Helper function
def _check_connectivity(G, k_components):
    for k, components in k_components.items():
        if k < 3:
            continue
        # check that k-components have node connectivity >= k.
        for component in components:
            C = G.subgraph(component)
            K = nx.node_connectivity(C)
            assert K >= k


@pytest.mark.slow
def test_torrents_and_ferraro_graph():
    G = torrents_and_ferraro_graph()
    result = nx.k_components(G)
    _check_connectivity(G, result)

    # In this example graph there are 8 3-components, 4 with 15 nodes
    # and 4 with 5 nodes.
    assert len(result[3]) == 8
    assert len([c for c in result[3] if len(c) == 15]) == 4
    assert len([c for c in result[3] if len(c) == 5]) == 4
    # There are also 8 4-components all with 5 nodes.
    assert len(result[4]) == 8
    assert all(len(c) == 5 for c in result[4])


@pytest.mark.slow
def test_random_gnp():
    G = nx.gnp_random_graph(50, 0.2, seed=42)
    result = nx.k_components(G)
    _check_connectivity(G, result)


@pytest.mark.slow
def test_shell():
    constructor = [(20, 80, 0.8), (80, 180, 0.6)]
    G = nx.random_shell_graph(constructor, seed=42)
    result = nx.k_components(G)
    _check_connectivity(G, result)


def test_configuration():
    deg_seq = nx.random_powerlaw_tree_sequence(100, tries=5, seed=72)
    G = nx.Graph(nx.configuration_model(deg_seq))
    G.remove_edges_from(nx.selfloop_edges(G))
    result = nx.k_components(G)
    _check_connectivity(G, result)


def test_karate():
    G = nx.karate_club_graph()
    result = nx.k_components(G)
    _check_connectivity(G, result)


def test_karate_component_number():
    karate_k_num = {
        0: 4,
        1: 4,
        2: 4,
        3: 4,
        4: 3,
        5: 3,
        6: 3,
        7: 4,
        8: 4,
        9: 2,
        10: 3,
        11: 1,
        12: 2,
        13: 4,
        14: 2,
        15: 2,
        16: 2,
        17: 2,
        18: 2,
        19: 3,
        20: 2,
        21: 2,
        22: 2,
        23: 3,
        24: 3,
        25: 3,
        26: 2,
        27: 3,
        28: 3,
        29: 3,
        30: 4,
        31: 3,
        32: 4,
        33: 4,
    }
    G = nx.karate_club_graph()
    k_components = nx.k_components(G)
    k_num = build_k_number_dict(k_components)
    assert karate_k_num == k_num


def test_davis_southern_women():
    G = nx.davis_southern_women_graph()
    result = nx.k_components(G)
    _check_connectivity(G, result)


def test_davis_southern_women_detail_3_and_4():
    solution = {
        3: [
            {
                "Nora Fayette",
                "E10",
                "Myra Liddel",
                "E12",
                "E14",
                "Frances Anderson",
                "Evelyn Jefferson",
                "Ruth DeSand",
                "Helen Lloyd",
                "Eleanor Nye",
                "E9",
                "E8",
                "E5",
                "E4",
                "E7",
                "E6",
                "E1",
                "Verne Sanderson",
                "E3",
                "E2",
                "Theresa Anderson",
                "Pearl Oglethorpe",
                "Katherina Rogers",
                "Brenda Rogers",
                "E13",
                "Charlotte McDowd",
                "Sylvia Avondale",
                "Laura Mandeville",
            }
        ],
        4: [
            {
                "Nora Fayette",
                "E10",
                "Verne Sanderson",
                "E12",
                "Frances Anderson",
                "Evelyn Jefferson",
                "Ruth DeSand",
                "Helen Lloyd",
                "Eleanor Nye",
                "E9",
                "E8",
                "E5",
                "E4",
                "E7",
                "E6",
                "Myra Liddel",
                "E3",
                "Theresa Anderson",
                "Katherina Rogers",
                "Brenda Rogers",
                "Charlotte McDowd",
                "Sylvia Avondale",
                "Laura Mandeville",
            }
        ],
    }
    G = nx.davis_southern_women_graph()
    result = nx.k_components(G)
    for k, components in result.items():
        if k < 3:
            continue
        assert len(components) == len(solution[k])
        for component in components:
            assert component in solution[k]


def test_set_consolidation_rosettacode():
    # Tests from http://rosettacode.org/wiki/Set_consolidation
    def list_of_sets_equal(result, solution):
        assert {frozenset(s) for s in result} == {frozenset(s) for s in solution}

    question = [{"A", "B"}, {"C", "D"}]
    solution = [{"A", "B"}, {"C", "D"}]
    list_of_sets_equal(_consolidate(question, 1), solution)
    question = [{"A", "B"}, {"B", "C"}]
    solution = [{"A", "B", "C"}]
    list_of_sets_equal(_consolidate(question, 1), solution)
    question = [{"A", "B"}, {"C", "D"}, {"D", "B"}]
    solution = [{"A", "C", "B", "D"}]
    list_of_sets_equal(_consolidate(question, 1), solution)
    question = [{"H", "I", "K"}, {"A", "B"}, {"C", "D"}, {"D", "B"}, {"F", "G", "H"}]
    solution = [{"A", "C", "B", "D"}, {"G", "F", "I", "H", "K"}]
    list_of_sets_equal(_consolidate(question, 1), solution)
    question = [
        {"A", "H"},
        {"H", "I", "K"},
        {"A", "B"},
        {"C", "D"},
        {"D", "B"},
        {"F", "G", "H"},
    ]
    solution = [{"A", "C", "B", "D", "G", "F", "I", "H", "K"}]
    list_of_sets_equal(_consolidate(question, 1), solution)
    question = [
        {"H", "I", "K"},
        {"A", "B"},
        {"C", "D"},
        {"D", "B"},
        {"F", "G", "H"},
        {"A", "H"},
    ]
    solution = [{"A", "C", "B", "D", "G", "F", "I", "H", "K"}]
    list_of_sets_equal(_consolidate(question, 1), solution)