Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/cwltool/tests/subgraph/extract_file1.json @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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-1:000000000000 | 0:4f3585e2f14b |
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1 { | |
2 "class": "Workflow", | |
3 "cwlVersion": "v1.0", | |
4 "id": "count-lines1-wf.cwl", | |
5 "inputs": [ | |
6 { | |
7 "id": "count-lines1-wf.cwl#file1", | |
8 "type": "File" | |
9 }, | |
10 { | |
11 "id": "count-lines1-wf.cwl#file3", | |
12 "type": "File" | |
13 } | |
14 ], | |
15 "outputs": [ | |
16 { | |
17 "id": "count-lines1-wf.cwl#count_output", | |
18 "outputSource": "count-lines1-wf.cwl#step2/output", | |
19 "type": "int" | |
20 }, | |
21 { | |
22 "id": "count-lines1-wf.cwl#output4", | |
23 "outputSource": "count-lines1-wf.cwl#step4/output", | |
24 "type": "int" | |
25 }, | |
26 { | |
27 "id": "count-lines1-wf.cwl#output5", | |
28 "outputSource": "count-lines1-wf.cwl#step5/output", | |
29 "type": "File" | |
30 } | |
31 ], | |
32 "steps": [ | |
33 { | |
34 "id": "count-lines1-wf.cwl#step1", | |
35 "in": [ | |
36 { | |
37 "id": "count-lines1-wf.cwl#step1/file1", | |
38 "source": "count-lines1-wf.cwl#file1" | |
39 } | |
40 ], | |
41 "out": [ | |
42 "count-lines1-wf.cwl#step1/output" | |
43 ], | |
44 "run": "wc-tool.cwl" | |
45 }, | |
46 { | |
47 "id": "count-lines1-wf.cwl#step2", | |
48 "in": [ | |
49 { | |
50 "id": "count-lines1-wf.cwl#step2/file1", | |
51 "source": "count-lines1-wf.cwl#step1/output" | |
52 } | |
53 ], | |
54 "out": [ | |
55 "count-lines1-wf.cwl#step2/output" | |
56 ], | |
57 "run": "parseInt-tool.cwl" | |
58 }, | |
59 { | |
60 "id": "count-lines1-wf.cwl#step4", | |
61 "in": [ | |
62 { | |
63 "id": "count-lines1-wf.cwl#step4/file1", | |
64 "source": "count-lines1-wf.cwl#step1/output" | |
65 } | |
66 ], | |
67 "label": "step that also depends on step1", | |
68 "out": [ | |
69 "count-lines1-wf.cwl#step4/output" | |
70 ], | |
71 "run": "parseInt-tool.cwl" | |
72 }, | |
73 { | |
74 "id": "count-lines1-wf.cwl#step5", | |
75 "in": [ | |
76 { | |
77 "id": "count-lines1-wf.cwl#step5/file1", | |
78 "source": "count-lines1-wf.cwl#file1" | |
79 }, | |
80 { | |
81 "id": "count-lines1-wf.cwl#step5/file3", | |
82 "source": "count-lines1-wf.cwl#file3" | |
83 } | |
84 ], | |
85 "label": "step with two inputs", | |
86 "out": [ | |
87 "count-lines1-wf.cwl#step5/output" | |
88 ], | |
89 "run": "wc-tool.cwl" | |
90 } | |
91 ] | |
92 } |