comparison env/lib/python3.9/site-packages/networkx/algorithms/approximation/tests/test_kcomponents.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

0:4f3585e2f14b

# Test for approximation to k-components algorithm
import pytest
import networkx as nx
from networkx.algorithms.approximation import k_components
from networkx.algorithms.approximation.kcomponents import _AntiGraph, _same


def build_k_number_dict(k_components):
    k_num = {}
    for k, comps in sorted(k_components.items()):
        for comp in comps:
            for node in comp:
                k_num[node] = k
    return k_num


##
# Some nice synthetic graphs
##


def graph_example_1():
    G = nx.convert_node_labels_to_integers(
        nx.grid_graph([5, 5]), label_attribute="labels"
    )
    rlabels = nx.get_node_attributes(G, "labels")
    labels = {v: k for k, v in rlabels.items()}

    for nodes in [
        (labels[(0, 0)], labels[(1, 0)]),
        (labels[(0, 4)], labels[(1, 4)]),
        (labels[(3, 0)], labels[(4, 0)]),
        (labels[(3, 4)], labels[(4, 4)]),
    ]:
        new_node = G.order() + 1
        # Petersen graph is triconnected
        P = nx.petersen_graph()
        G = nx.disjoint_union(G, P)
        # Add two edges between the grid and P
        G.add_edge(new_node + 1, nodes[0])
        G.add_edge(new_node, nodes[1])
        # K5 is 4-connected
        K = nx.complete_graph(5)
        G = nx.disjoint_union(G, K)
        # Add three edges between P and K5
        G.add_edge(new_node + 2, new_node + 11)
        G.add_edge(new_node + 3, new_node + 12)
        G.add_edge(new_node + 4, new_node + 13)
        # Add another K5 sharing a node
        G = nx.disjoint_union(G, K)
        nbrs = G[new_node + 10]
        G.remove_node(new_node + 10)
        for nbr in nbrs:
            G.add_edge(new_node + 17, nbr)
        G.add_edge(new_node + 16, new_node + 5)
    return G


def torrents_and_ferraro_graph():
    G = nx.convert_node_labels_to_integers(
        nx.grid_graph([5, 5]), label_attribute="labels"
    )
    rlabels = nx.get_node_attributes(G, "labels")
    labels = {v: k for k, v in rlabels.items()}

    for nodes in [(labels[(0, 4)], labels[(1, 4)]), (labels[(3, 4)], labels[(4, 4)])]:
        new_node = G.order() + 1
        # Petersen graph is triconnected
        P = nx.petersen_graph()
        G = nx.disjoint_union(G, P)
        # Add two edges between the grid and P
        G.add_edge(new_node + 1, nodes[0])
        G.add_edge(new_node, nodes[1])
        # K5 is 4-connected
        K = nx.complete_graph(5)
        G = nx.disjoint_union(G, K)
        # Add three edges between P and K5
        G.add_edge(new_node + 2, new_node + 11)
        G.add_edge(new_node + 3, new_node + 12)
        G.add_edge(new_node + 4, new_node + 13)
        # Add another K5 sharing a node
        G = nx.disjoint_union(G, K)
        nbrs = G[new_node + 10]
        G.remove_node(new_node + 10)
        for nbr in nbrs:
            G.add_edge(new_node + 17, nbr)
        # Commenting this makes the graph not biconnected !!
        # This stupid mistake make one reviewer very angry :P
        G.add_edge(new_node + 16, new_node + 8)

    for nodes in [(labels[(0, 0)], labels[(1, 0)]), (labels[(3, 0)], labels[(4, 0)])]:
        new_node = G.order() + 1
        # Petersen graph is triconnected
        P = nx.petersen_graph()
        G = nx.disjoint_union(G, P)
        # Add two edges between the grid and P
        G.add_edge(new_node + 1, nodes[0])
        G.add_edge(new_node, nodes[1])
        # K5 is 4-connected
        K = nx.complete_graph(5)
        G = nx.disjoint_union(G, K)
        # Add three edges between P and K5
        G.add_edge(new_node + 2, new_node + 11)
        G.add_edge(new_node + 3, new_node + 12)
        G.add_edge(new_node + 4, new_node + 13)
        # Add another K5 sharing two nodes
        G = nx.disjoint_union(G, K)
        nbrs = G[new_node + 10]
        G.remove_node(new_node + 10)
        for nbr in nbrs:
            G.add_edge(new_node + 17, nbr)
        nbrs2 = G[new_node + 9]
        G.remove_node(new_node + 9)
        for nbr in nbrs2:
            G.add_edge(new_node + 18, nbr)
    return G


# Helper function


def _check_connectivity(G):
    result = k_components(G)
    for k, components in result.items():
        if k < 3:
            continue
        for component in components:
            C = G.subgraph(component)
            K = nx.node_connectivity(C)
            assert K >= k


def test_torrents_and_ferraro_graph():
    G = torrents_and_ferraro_graph()
    _check_connectivity(G)


def test_example_1():
    G = graph_example_1()
    _check_connectivity(G)


def test_karate_0():
    G = nx.karate_club_graph()
    _check_connectivity(G)


def test_karate_1():
    karate_k_num = {
        0: 4,
        1: 4,
        2: 4,
        3: 4,
        4: 3,
        5: 3,
        6: 3,
        7: 4,
        8: 4,
        9: 2,
        10: 3,
        11: 1,
        12: 2,
        13: 4,
        14: 2,
        15: 2,
        16: 2,
        17: 2,
        18: 2,
        19: 3,
        20: 2,
        21: 2,
        22: 2,
        23: 3,
        24: 3,
        25: 3,
        26: 2,
        27: 3,
        28: 3,
        29: 3,
        30: 4,
        31: 3,
        32: 4,
        33: 4,
    }
    approx_karate_k_num = karate_k_num.copy()
    approx_karate_k_num[24] = 2
    approx_karate_k_num[25] = 2
    G = nx.karate_club_graph()
    k_comps = k_components(G)
    k_num = build_k_number_dict(k_comps)
    assert k_num in (karate_k_num, approx_karate_k_num)


def test_example_1_detail_3_and_4():
    G = graph_example_1()
    result = k_components(G)
    # In this example graph there are 8 3-components, 4 with 15 nodes
    # and 4 with 5 nodes.
    assert len(result[3]) == 8
    assert len([c for c in result[3] if len(c) == 15]) == 4
    assert len([c for c in result[3] if len(c) == 5]) == 4
    # There are also 8 4-components all with 5 nodes.
    assert len(result[4]) == 8
    assert all(len(c) == 5 for c in result[4])
    # Finally check that the k-components detected have actually node
    # connectivity >= k.
    for k, components in result.items():
        if k < 3:
            continue
        for component in components:
            K = nx.node_connectivity(G.subgraph(component))
            assert K >= k


def test_directed():
    with pytest.raises(nx.NetworkXNotImplemented):
        G = nx.gnp_random_graph(10, 0.4, directed=True)
        kc = k_components(G)


def test_same():
    equal = {"A": 2, "B": 2, "C": 2}
    slightly_different = {"A": 2, "B": 1, "C": 2}
    different = {"A": 2, "B": 8, "C": 18}
    assert _same(equal)
    assert not _same(slightly_different)
    assert _same(slightly_different, tol=1)
    assert not _same(different)
    assert not _same(different, tol=4)


class TestAntiGraph:
    @classmethod
    def setup_class(cls):
        cls.Gnp = nx.gnp_random_graph(20, 0.8)
        cls.Anp = _AntiGraph(nx.complement(cls.Gnp))
        cls.Gd = nx.davis_southern_women_graph()
        cls.Ad = _AntiGraph(nx.complement(cls.Gd))
        cls.Gk = nx.karate_club_graph()
        cls.Ak = _AntiGraph(nx.complement(cls.Gk))
        cls.GA = [(cls.Gnp, cls.Anp), (cls.Gd, cls.Ad), (cls.Gk, cls.Ak)]

    def test_size(self):
        for G, A in self.GA:
            n = G.order()
            s = len(list(G.edges())) + len(list(A.edges()))
            assert s == (n * (n - 1)) / 2

    def test_degree(self):
        for G, A in self.GA:
            assert sorted(G.degree()) == sorted(A.degree())

    def test_core_number(self):
        for G, A in self.GA:
            assert nx.core_number(G) == nx.core_number(A)

    def test_connected_components(self):
        for G, A in self.GA:
            gc = [set(c) for c in nx.connected_components(G)]
            ac = [set(c) for c in nx.connected_components(A)]
            for comp in ac:
                assert comp in gc

    def test_adj(self):
        for G, A in self.GA:
            for n, nbrs in G.adj.items():
                a_adj = sorted((n, sorted(ad)) for n, ad in A.adj.items())
                g_adj = sorted((n, sorted(ad)) for n, ad in G.adj.items())
                assert a_adj == g_adj

    def test_adjacency(self):
        for G, A in self.GA:
            a_adj = list(A.adjacency())
            for n, nbrs in G.adjacency():
                assert (n, set(nbrs)) in a_adj

    def test_neighbors(self):
        for G, A in self.GA:
            node = list(G.nodes())[0]
            assert set(G.neighbors(node)) == set(A.neighbors(node))

    def test_node_not_in_graph(self):
        for G, A in self.GA:
            node = "non_existent_node"
            pytest.raises(nx.NetworkXError, A.neighbors, node)
            pytest.raises(nx.NetworkXError, G.neighbors, node)

    def test_degree_thingraph(self):
        for G, A in self.GA:
            node = list(G.nodes())[0]
            nodes = list(G.nodes())[1:4]
            assert G.degree(node) == A.degree(node)
            assert sum(d for n, d in G.degree()) == sum(d for n, d in A.degree())
            # AntiGraph is a ThinGraph, so all the weights are 1
            assert sum(d for n, d in A.degree()) == sum(
                d for n, d in A.degree(weight="weight")
            )
            assert sum(d for n, d in G.degree(nodes)) == sum(
                d for n, d in A.degree(nodes)
            )