diff env/lib/python3.9/site-packages/bioblend/toolshed/__init__.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/bioblend/toolshed/__init__.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,52 @@
+"""
+A base representation of an instance of Tool Shed
+"""
+from bioblend.galaxyclient import GalaxyClient
+from bioblend.toolshed import categories, repositories, tools
+
+
+class ToolShedInstance(GalaxyClient):
+    def __init__(self, url, key=None, email=None, password=None, verify=True):
+        """
+        A base representation of a connection to a ToolShed instance, identified
+        by the ToolShed URL and user credentials.
+
+        After you have created a ``ToolShedInstance`` object, access various
+        modules via the class fields. For example, to work with repositories and
+        get a list of all public repositories, the following should be done::
+
+            from bioblend import toolshed
+
+            ts = toolshed.ToolShedInstance(url='https://testtoolshed.g2.bx.psu.edu')
+
+            rl = ts.repositories.get_repositories()
+
+            tools = ts.tools.search_tools('fastq')
+
+        :type url: str
+        :param url: A FQDN or IP for a given instance of ToolShed. For example:
+                    https://testtoolshed.g2.bx.psu.edu . If a ToolShed instance
+                    is served under a prefix (e.g.
+                    http://127.0.0.1:8080/toolshed/), supply the entire URL
+                    including the prefix (note that the prefix must end with a
+                    slash).
+
+        :type key: str
+        :param key: If required, user's API key for the given instance of ToolShed,
+                    obtained from the user preferences.
+
+        :type email: str
+        :param email: ToolShed e-mail address corresponding to the user.
+                      Ignored if key is supplied directly.
+
+        :type password: str
+        :param password: Password of ToolShed account corresponding to the above
+                         e-mail address. Ignored if key is supplied directly.
+
+        :param verify: Whether to verify the server's TLS certificate
+        :type verify: bool
+        """
+        super().__init__(url, key, email, password, verify=verify)
+        self.categories = categories.ToolShedCategoryClient(self)
+        self.repositories = repositories.ToolShedRepositoryClient(self)
+        self.tools = tools.ToolShedToolClient(self)