diff env/lib/python3.9/site-packages/cwltool/provenance_constants.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/cwltool/provenance_constants.py	Mon Mar 22 18:12:50 2021 +0000
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+import hashlib
+import os
+import uuid
+
+from prov.identifier import Namespace
+
+__citation__ = "https://doi.org/10.5281/zenodo.1208477"
+
+# NOTE: Semantic versioning of the CWLProv Research Object
+# **and** the cwlprov files
+#
+# Rough guide (major.minor.patch):
+# 1. Bump major number if removing/"breaking" resources or PROV statements
+# 2. Bump minor number if adding resources or PROV statements
+# 3. Bump patch number for non-breaking non-adding changes,
+#    e.g. fixing broken relative paths
+CWLPROV_VERSION = "https://w3id.org/cwl/prov/0.6.0"
+
+# Research Object folders
+METADATA = "metadata"
+DATA = "data"
+WORKFLOW = "workflow"
+SNAPSHOT = "snapshot"
+# sub-folders
+MAIN = os.path.join(WORKFLOW, "main")
+PROVENANCE = os.path.join(METADATA, "provenance")
+LOGS = os.path.join(METADATA, "logs")
+WFDESC = Namespace("wfdesc", "http://purl.org/wf4ever/wfdesc#")
+WFPROV = Namespace("wfprov", "http://purl.org/wf4ever/wfprov#")
+WF4EVER = Namespace("wf4ever", "http://purl.org/wf4ever/wf4ever#")
+RO = Namespace("ro", "http://purl.org/wf4ever/ro#")
+ORE = Namespace("ore", "http://www.openarchives.org/ore/terms/")
+FOAF = Namespace("foaf", "http://xmlns.com/foaf/0.1/")
+SCHEMA = Namespace("schema", "http://schema.org/")
+CWLPROV = Namespace("cwlprov", "https://w3id.org/cwl/prov#")
+ORCID = Namespace("orcid", "https://orcid.org/")
+UUID = Namespace("id", "urn:uuid:")
+
+# BagIt and YAML always use UTF-8
+ENCODING = "UTF-8"
+TEXT_PLAIN = 'text/plain; charset="%s"' % ENCODING
+
+# sha1, compatible with the File type's "checksum" field
+# e.g. "checksum" = "sha1$47a013e660d408619d894b20806b1d5086aab03b"
+# See ./cwltool/schemas/v1.0/Process.yml
+Hasher = hashlib.sha1
+SHA1 = "sha1"
+SHA256 = "sha256"
+SHA512 = "sha512"
+
+# TODO: Better identifiers for user, at least
+# these should be preserved in ~/.config/cwl for every execution
+# on this host
+USER_UUID = uuid.uuid4().urn
+ACCOUNT_UUID = uuid.uuid4().urn