Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/secondary-files.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/secondary-files.cwl Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,36 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1.0-dev1 + +requirements: + - class: InlineJavascriptRequirement + - class: ShellCommandRequirement + +class: CommandLineTool + +inputs: + fasta_path: + type: File + secondaryFiles: + - pattern: ^.fastq + required: true + - pattern: .crai + required: false + - .bai? + - pattern: "${ return null }" + +outputs: + bai_list: + type: File + outputBinding: + glob: lsout + secondaryFiles: + - .bai? + - pattern: "${ return null }" + - pattern: .crai + required: false + - pattern: .idx + +baseCommand: ["ls"] + +stdout: lsout \ No newline at end of file