Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/test_parallel.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/test_parallel.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,32 @@ +import json +from pathlib import Path + +from cwltool.context import RuntimeContext +from cwltool.executors import MultithreadedJobExecutor + +from .util import get_data, get_windows_safe_factory, windows_needs_docker + + +@windows_needs_docker +def test_sequential_workflow(tmp_path: Path) -> None: + test_file = "tests/wf/count-lines1-wf.cwl" + executor = MultithreadedJobExecutor() + runtime_context = RuntimeContext() + runtime_context.outdir = str(tmp_path) + runtime_context.select_resources = executor.select_resources + factory = get_windows_safe_factory( + executor=executor, runtime_context=runtime_context + ) + echo = factory.make(get_data(test_file)) + file_contents = {"class": "File", "location": get_data("tests/wf/whale.txt")} + assert echo(file1=file_contents) == {"count_output": 16} + + +@windows_needs_docker +def test_scattered_workflow() -> None: + test_file = "tests/wf/scatter-wf4.cwl" + job_file = "tests/wf/scatter-job2.json" + factory = get_windows_safe_factory(executor=MultithreadedJobExecutor()) + echo = factory.make(get_data(test_file)) + with open(get_data(job_file)) as job: + assert echo(**json.load(job)) == {"out": ["foo one three", "foo two four"]}