diff env/lib/python3.9/site-packages/cwltool/tests/wf/expect_packed.cwl @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/cwltool/tests/wf/expect_packed.cwl	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,138 @@
+#!/usr/bin/env cwl-runner
+{
+    "$graph": [
+        {
+            "class": "Workflow",
+            "doc": "Reverse the lines in a document, then sort those lines.",
+            "hints": [
+                {
+                    "class": "DockerRequirement",
+                    "dockerPull": "debian:8"
+                }
+            ],
+            "inputs": [
+                {
+                    "type": "boolean",
+                    "default": true,
+                    "doc": "If true, reverse (decending) sort",
+                    "id": "#main/reverse_sort"
+                },
+                {
+                    "type": "File",
+                    "doc": "The input file to be processed.",
+                    "format": "https://www.iana.org/assignments/media-types/text/plain",
+                    "default": {
+                        "class": "File",
+                        "location": "hello.txt"
+                    },
+                    "id": "#main/workflow_input"
+                }
+            ],
+            "outputs": [
+                {
+                    "type": "File",
+                    "outputSource": "#main/sorted/sorted_output",
+                    "doc": "The output with the lines reversed and sorted.",
+                    "id": "#main/sorted_output"
+                }
+            ],
+            "steps": [
+                {
+                    "in": [
+                        {
+                            "source": "#main/workflow_input",
+                            "id": "#main/rev/revtool_input"
+                        }
+                    ],
+                    "out": [
+                        "#main/rev/revtool_output"
+                    ],
+                    "run": "#revtool.cwl",
+                    "id": "#main/rev"
+                },
+                {
+                    "in": [
+                        {
+                            "source": "#main/reverse_sort",
+                            "id": "#main/sorted/reverse"
+                        },
+                        {
+                            "source": "#main/rev/revtool_output",
+                            "id": "#main/sorted/sorted_input"
+                        }
+                    ],
+                    "out": [
+                        "#main/sorted/sorted_output"
+                    ],
+                    "run": "#sorttool.cwl",
+                    "id": "#main/sorted"
+                }
+            ],
+            "id": "#main",
+            "$namespaces": {
+                "iana": "https://www.iana.org/assignments/media-types/"
+            }
+        },
+        {
+            "class": "CommandLineTool",
+            "doc": "Reverse each line using the `rev` command",
+            "inputs": [
+                {
+                    "type": "File",
+                    "inputBinding": {},
+                    "id": "#revtool.cwl/revtool_input"
+                }
+            ],
+            "outputs": [
+                {
+                    "type": "File",
+                    "outputBinding": {
+                        "glob": "output.txt"
+                    },
+                    "id": "#revtool.cwl/revtool_output"
+                }
+            ],
+            "baseCommand": "rev",
+            "stdout": "output.txt",
+            "id": "#revtool.cwl"
+        },
+        {
+            "class": "CommandLineTool",
+            "doc": "Sort lines using the `sort` command",
+            "inputs": [
+                {
+                    "id": "#sorttool.cwl/reverse",
+                    "type": "boolean",
+                    "inputBinding": {
+                        "position": 1,
+                        "prefix": "--reverse"
+                    }
+                },
+                {
+                    "id": "#sorttool.cwl/sorted_input",
+                    "type": "File",
+                    "inputBinding": {
+                        "position": 2
+                    }
+                }
+            ],
+            "outputs": [
+                {
+                    "id": "#sorttool.cwl/sorted_output",
+                    "type": "File",
+                    "outputBinding": {
+                        "glob": "output.txt"
+                    }
+                }
+            ],
+            "baseCommand": "sort",
+            "stdout": "output.txt",
+            "id": "#sorttool.cwl"
+        }
+    ],
+    "cwlVersion": "v1.0",
+    "$schemas": [
+        "empty.ttl",
+        "empty2.ttl"
+    ]
+}