Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/wf/iwdr_permutations.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
---|---|
date | Mon, 22 Mar 2021 18:12:50 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/wf/iwdr_permutations.cwl Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,76 @@ +#!/usr/bin/env cwl-runner +class: CommandLineTool +cwlVersion: v1.2.0-dev4 +requirements: + DockerRequirement: + dockerPull: debian + InitialWorkDirRequirement: + listing: + - entry: $(inputs.first) + entryname: first_writable_file + writable: true + - entry: $(inputs.second) + entryname: second_read_only_file + writable: false + - entry: $(inputs.third) + entryname: /my_path/third_writable_file + writable: true + - entry: $(inputs.fourth) + entryname: /my_other_path/fourth_read_only_file + writable: false + - entry: $(inputs.fifth) + entryname: fifth_writable_directory + writable: true + - entry: $(inputs.sixth) + entryname: sixth_read_only_directory + writable: false + - entry: $(inputs.seventh) + entryname: /my_path/seventh_writable_directory + writable: true + - entry: $(inputs.eighth) + entryname: /my_other_path/eighth_read_only_directory + writable: false + - entry: $(inputs.ninth) + entryname: nineth_writable_directory_literal + writable: true + - entry: $(inputs.tenth) + entryname: /my_path/tenth_writable_directory_literal + writable: true + - entry: baz + entryname: /my_path/my_file_literal +inputs: + first: File + second: File + third: File + fourth: File + fifth: Directory + sixth: Directory + seventh: Directory + eighth: Directory + ninth: + type: Directory + default: + class: Directory + basename: foo + listing: [] + tenth: + type: Directory + default: + class: Directory + basename: bar + listing: [] +outputs: + out: + type: Directory + outputBinding: + glob: . +baseCommand: [bash, -c] +arguments: + - | + find . + find /my_path + find /my_other_path + echo "a" > first_writable_file + echo "b" > /my_path/third_writable_file + touch fifth_writable_directory/c + touch /my_path/seventh_writable_directory/d