diff env/lib/python3.9/site-packages/cwltool/tests/wf/revsort.cwl @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/cwltool/tests/wf/revsort.cwl	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,76 @@
+#!/usr/bin/env cwl-runner
+#
+# This is a two-step workflow which uses "revtool" and "sorttool" defined above.
+#
+class: Workflow
+doc: "Reverse the lines in a document, then sort those lines."
+cwlVersion: v1.0
+
+# Requirements & hints specify prerequisites and extensions to the workflow.
+# In this example, DockerRequirement specifies a default Docker container
+# in which the command line tools will execute.
+hints:
+  - class: DockerRequirement
+    dockerPull: debian:8
+
+
+# The inputs array defines the structure of the input object that describes
+# the inputs to the workflow.
+#
+# The "reverse_sort" input parameter demonstrates the "default" field.  If the
+# field "reverse_sort" is not provided in the input object, the default value will
+# be used.
+inputs:
+  workflow_input:
+    type: File
+    doc: "The input file to be processed."
+    format: iana:text/plain
+    default:
+      class: File
+      location: hello.txt
+  reverse_sort:
+    type: boolean
+    default: true
+    doc: "If true, reverse (decending) sort"
+
+# The "outputs" array defines the structure of the output object that describes
+# the outputs of the workflow.
+#
+# Each output field must be connected to the output of one of the workflow
+# steps using the "outputSource" field.  Here, the parameter "sorted_output" of the
+# workflow comes from the "sorted_output" output of the "sorted" step.
+outputs:
+  sorted_output:
+    type: File
+    outputSource: sorted/sorted_output
+    doc: "The output with the lines reversed and sorted."
+
+# The "steps" array lists the executable steps that make up the workflow.
+# The tool to execute each step is listed in the "run" field.
+#
+# In the first step, the "in" field of the step connects the upstream
+# parameter "workflow_input" of the workflow to the input parameter of the tool
+# "revtool_input"
+#
+# In the second step, the "in" field of the step connects the output
+# parameter "revtool_output" from the first step to the input parameter of the
+# tool "sorted_input".
+steps:
+  rev:
+    in:
+      revtool_input: workflow_input
+    out: [revtool_output]
+    run: revtool.cwl
+
+  sorted:
+    in:
+      sorted_input: rev/revtool_output
+      reverse: reverse_sort
+    out: [sorted_output]
+    run: sorttool.cwl
+
+$namespaces:
+  iana: https://www.iana.org/assignments/media-types/
+
+$schemas:
+ - empty2.ttl