Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/wf/sorttool.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/wf/sorttool.cwl Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,36 @@ +#!/usr/bin/env cwl-runner +# Example command line program wrapper for the Unix tool "sort" +# demonstrating command line flags. +class: CommandLineTool +doc: "Sort lines using the `sort` command" +cwlVersion: v1.0 + +# This example is similar to the previous one, with an additional input +# parameter called "reverse". It is a boolean parameter, which is +# intepreted as a command line flag. The value of "prefix" is used for +# flag to put on the command line if "reverse" is true, if "reverse" is +# false, no flag is added. +# +# This example also introduced the "position" field. This indicates the +# sorting order of items on the command line. Lower numbers are placed +# before higher numbers. Here, the "--reverse" flag (if present) will be +# added to the command line before the input file path. +inputs: + - id: reverse + type: boolean + inputBinding: + position: 1 + prefix: "--reverse" + - id: sorted_input + type: File + inputBinding: + position: 2 + +outputs: + - id: sorted_output + type: File + outputBinding: + glob: output.txt + +baseCommand: sort +stdout: output.txt