Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/networkx/algorithms/bridges.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/networkx/algorithms/bridges.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,181 @@ +"""Bridge-finding algorithms.""" +from itertools import chain + +import networkx as nx +from networkx.utils import not_implemented_for + +__all__ = ["bridges", "has_bridges", "local_bridges"] + + +@not_implemented_for("multigraph") +@not_implemented_for("directed") +def bridges(G, root=None): + """Generate all bridges in a graph. + + A *bridge* in a graph is an edge whose removal causes the number of + connected components of the graph to increase. Equivalently, a bridge is an + edge that does not belong to any cycle. + + Parameters + ---------- + G : undirected graph + + root : node (optional) + A node in the graph `G`. If specified, only the bridges in the + connected component containing this node will be returned. + + Yields + ------ + e : edge + An edge in the graph whose removal disconnects the graph (or + causes the number of connected components to increase). + + Raises + ------ + NodeNotFound + If `root` is not in the graph `G`. + + Examples + -------- + The barbell graph with parameter zero has a single bridge: + + >>> G = nx.barbell_graph(10, 0) + >>> list(nx.bridges(G)) + [(9, 10)] + + Notes + ----- + This is an implementation of the algorithm described in _[1]. An edge is a + bridge if and only if it is not contained in any chain. Chains are found + using the :func:`networkx.chain_decomposition` function. + + Ignoring polylogarithmic factors, the worst-case time complexity is the + same as the :func:`networkx.chain_decomposition` function, + $O(m + n)$, where $n$ is the number of nodes in the graph and $m$ is + the number of edges. + + References + ---------- + .. [1] https://en.wikipedia.org/wiki/Bridge_%28graph_theory%29#Bridge-Finding_with_Chain_Decompositions + """ + chains = nx.chain_decomposition(G, root=root) + chain_edges = set(chain.from_iterable(chains)) + for u, v in G.edges(): + if (u, v) not in chain_edges and (v, u) not in chain_edges: + yield u, v + + +@not_implemented_for("multigraph") +@not_implemented_for("directed") +def has_bridges(G, root=None): + """Decide whether a graph has any bridges. + + A *bridge* in a graph is an edge whose removal causes the number of + connected components of the graph to increase. + + Parameters + ---------- + G : undirected graph + + root : node (optional) + A node in the graph `G`. If specified, only the bridges in the + connected component containing this node will be considered. + + Returns + ------- + bool + Whether the graph (or the connected component containing `root`) + has any bridges. + + Raises + ------ + NodeNotFound + If `root` is not in the graph `G`. + + Examples + -------- + The barbell graph with parameter zero has a single bridge:: + + >>> G = nx.barbell_graph(10, 0) + >>> nx.has_bridges(G) + True + + On the other hand, the cycle graph has no bridges:: + + >>> G = nx.cycle_graph(5) + >>> nx.has_bridges(G) + False + + Notes + ----- + This implementation uses the :func:`networkx.bridges` function, so + it shares its worst-case time complexity, $O(m + n)$, ignoring + polylogarithmic factors, where $n$ is the number of nodes in the + graph and $m$ is the number of edges. + + """ + try: + next(bridges(G)) + except StopIteration: + return False + else: + return True + + +@not_implemented_for("multigraph") +@not_implemented_for("directed") +def local_bridges(G, with_span=True, weight=None): + """Iterate over local bridges of `G` optionally computing the span + + A *local bridge* is an edge whose endpoints have no common neighbors. + That is, the edge is not part of a triangle in the graph. + + The *span* of a *local bridge* is the shortest path length between + the endpoints if the local bridge is removed. + + Parameters + ---------- + G : undirected graph + + with_span : bool + If True, yield a 3-tuple `(u, v, span)` + + weight : function, string or None (default: None) + If function, used to compute edge weights for the span. + If string, the edge data attribute used in calculating span. + If None, all edges have weight 1. + + Yields + ------ + e : edge + The local bridges as an edge 2-tuple of nodes `(u, v)` or + as a 3-tuple `(u, v, span)` when `with_span is True`. + + Examples + -------- + A cycle graph has every edge a local bridge with span N-1. + + >>> G = nx.cycle_graph(9) + >>> (0, 8, 8) in set(nx.local_bridges(G)) + True + """ + if with_span is not True: + for u, v in G.edges: + if not (set(G[u]) & set(G[v])): + yield u, v + else: + wt = nx.weighted._weight_function(G, weight) + for u, v in G.edges: + if not (set(G[u]) & set(G[v])): + enodes = {u, v} + + def hide_edge(n, nbr, d): + if n not in enodes or nbr not in enodes: + return wt(n, nbr, d) + return None + + try: + span = nx.shortest_path_length(G, u, v, weight=hide_edge) + yield u, v, span + except nx.NetworkXNoPath: + yield u, v, float("inf")