diff env/lib/python3.9/site-packages/bioblend/__init__.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/bioblend/__init__.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,104 @@
+import logging
+import os
+
+from bioblend.config import (
+    BioBlendConfigLocations,
+    Config,
+)
+
+# Current version of the library
+__version__ = '0.15.0'
+
+# default chunk size (in bytes) for reading remote data
+try:
+    import resource
+    CHUNK_SIZE = resource.getpagesize()
+except Exception:
+    CHUNK_SIZE = 4096
+
+
+config = Config()
+
+
+def get_version():
+    """
+    Returns a string with the current version of the library (e.g., "0.2.0")
+    """
+    return __version__
+
+
+def init_logging():
+    """
+    Initialize BioBlend's logging from a configuration file.
+    """
+    for config_file in BioBlendConfigLocations:
+        try:
+            logging.config.fileConfig(os.path.expanduser(config_file))
+        except Exception:
+            pass
+
+
+class NullHandler(logging.Handler):
+    def emit(self, record):
+        pass
+
+
+# By default, do not force any logging by the library. If you want to see the
+# log messages in your scripts, add the following to the top of your script:
+#   import logging
+#   logging.basicConfig(filename="bioblend.log", level=logging.DEBUG)
+default_format_string = "%(asctime)s %(name)s [%(levelname)s]: %(message)s"
+log = logging.getLogger('bioblend')
+log.addHandler(NullHandler())
+init_logging()
+
+# Convenience functions to set logging to a particular file or stream
+# To enable either of these, simply add the following at the top of a
+# bioblend module:
+#   import bioblend
+#   bioblend.set_stream_logger(__name__)
+
+
+def set_file_logger(name, filepath, level=logging.INFO, format_string=None):
+    global log
+    if not format_string:
+        format_string = default_format_string
+    logger = logging.getLogger(name)
+    logger.setLevel(level)
+    fh = logging.FileHandler(filepath)
+    fh.setLevel(level)
+    formatter = logging.Formatter(format_string)
+    fh.setFormatter(formatter)
+    logger.addHandler(fh)
+    log = logger
+
+
+def set_stream_logger(name, level=logging.DEBUG, format_string=None):
+    global log
+    if not format_string:
+        format_string = default_format_string
+    logger = logging.getLogger(name)
+    logger.setLevel(level)
+    fh = logging.StreamHandler()
+    fh.setLevel(level)
+    formatter = logging.Formatter(format_string)
+    fh.setFormatter(formatter)
+    logger.addHandler(fh)
+    log = logger
+
+
+class ConnectionError(Exception):
+    """
+    An exception class that is raised when unexpected HTTP responses come back.
+
+    Should make it easier to debug when strange HTTP things happen such as a
+    proxy server getting in the way of the request etc.
+    @see: body attribute to see the content of the http response
+    """
+    def __init__(self, message, body=None, status_code=None):
+        super().__init__(message)
+        self.body = body
+        self.status_code = status_code
+
+    def __str__(self):
+        return "{}: {}".format(self.args[0], self.body)