diff env/lib/python3.9/site-packages/bioblend/_tests/TestGalaxyDatasets.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/bioblend/_tests/TestGalaxyDatasets.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,59 @@
+import shutil
+import tempfile
+
+from . import (
+    GalaxyTestBase,
+    test_util
+)
+
+
+class TestGalaxyDatasets(GalaxyTestBase.GalaxyTestBase):
+
+    def setUp(self):
+        super().setUp()
+        self.history_id = self.gi.histories.create_history(name='TestShowDataset')['id']
+        self.dataset_contents = "line 1\nline 2\rline 3\r\nline 4"
+        self.dataset_id = self._test_dataset(self.history_id, contents=self.dataset_contents)
+
+    def tearDown(self):
+        self.gi.histories.delete_history(self.history_id, purge=True)
+
+    @test_util.skip_unless_galaxy('release_19.05')
+    def test_show_nonexistent_dataset(self):
+        with self.assertRaises(Exception):
+            self.gi.datasets.show_dataset('nonexistent_id')
+
+    def test_show_dataset(self):
+        self.gi.datasets.show_dataset(self.dataset_id)
+
+    def test_download_dataset(self):
+        with self.assertRaises(Exception):
+            self.gi.datasets.download_dataset(None)
+        expected_contents = ("\n".join(self.dataset_contents.splitlines()) + "\n").encode()
+        # download_dataset() with file_path=None is already tested in TestGalaxyTools.test_paste_content()
+        # self._wait_and_verify_dataset(self.dataset_id, expected_contents)
+        tempdir = tempfile.mkdtemp(prefix='bioblend_test_')
+        try:
+            downloaded_dataset = self.gi.datasets.download_dataset(
+                self.dataset_id, file_path=tempdir,
+                maxwait=GalaxyTestBase.BIOBLEND_TEST_JOB_TIMEOUT * 2)
+            self.assertTrue(downloaded_dataset.startswith(tempdir))
+            with open(downloaded_dataset, 'rb') as f:
+                self.assertEqual(f.read(), expected_contents)
+        finally:
+            shutil.rmtree(tempdir)
+        with tempfile.NamedTemporaryFile(prefix='bioblend_test_') as f:
+            download_filename = self.gi.datasets.download_dataset(
+                self.dataset_id, file_path=f.name, use_default_filename=False,
+                maxwait=GalaxyTestBase.BIOBLEND_TEST_JOB_TIMEOUT)
+            self.assertEqual(download_filename, f.name)
+            f.flush()
+            self.assertEqual(f.read(), expected_contents)
+
+    @test_util.skip_unless_galaxy('release_19.05')
+    def test_get_datasets(self):
+        datasets = self.gi.datasets.get_datasets()
+        dataset_ids = [dataset['id'] for dataset in datasets]
+        assert self.dataset_id in dataset_ids
+        datasets = self.gi.datasets.get_datasets(limit=0)
+        assert datasets == []