diff env/lib/python3.9/site-packages/bioblend/_tests/TestGalaxyInvocations.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/bioblend/_tests/TestGalaxyInvocations.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,75 @@
+import os
+import time
+
+from . import GalaxyTestBase, test_util
+
+
+class TestGalaxyInvocations(GalaxyTestBase.GalaxyTestBase):
+    @test_util.skip_unless_galaxy('release_19.09')
+    def test_invocation(self):
+        path = test_util.get_abspath(os.path.join('data', 'paste_columns.ga'))
+        workflow = self.gi.workflows.import_workflow_from_local_path(path)
+        history_id = self.gi.histories.create_history(name="TestWorkflowState")["id"]
+        dataset1_id = self._test_dataset(history_id)
+        dataset = {'src': 'hda', 'id': dataset1_id}
+
+        invocation = self.gi.workflows.invoke_workflow(
+            workflow['id'],
+            inputs={'Input 1': dataset, 'Input 2': dataset},
+            history_id=history_id,
+            inputs_by='name',
+        )
+
+        invocation_id = invocation["id"]
+        invocations = self.gi.invocations.get_invocations()
+        self.assertEqual(len(invocations), 1)
+        self.assertEqual(invocations[0]["id"], invocation_id)
+        self.gi.invocations.cancel_invocation(invocation_id)
+        invocation = self.gi.invocations.show_invocation(invocation_id)
+        self.assertEqual(invocation['state'], 'cancelled')
+
+        summary = self.gi.invocations.get_invocation_summary(invocation_id)
+        report = self.gi.invocations.get_invocation_report(invocation_id)
+
+        assert summary['states'] == {}
+        assert report['workflows'] == {workflow['id']: {'name': 'paste_columns'}}
+
+    @test_util.skip_unless_galaxy('release_19.09')
+    @test_util.skip_unless_tool("cat1")
+    @test_util.skip_unless_tool("cat")
+    def test_workflow_scheduling(self):
+        path = test_util.get_abspath(os.path.join('data', 'test_workflow_pause.ga'))
+        workflow = self.gi.workflows.import_workflow_from_local_path(path)
+        history_id = self.gi.histories.create_history(name="TestWorkflowState")["id"]
+        dataset1_id = self._test_dataset(history_id)
+
+        invocation = self.gi.workflows.invoke_workflow(
+            workflow["id"],
+            inputs={"0": {"src": "hda", "id": dataset1_id}},
+        )
+        invocation_id = invocation["id"]
+
+        def invocation_steps_by_order_index():
+            invocation = self.gi.invocations.show_invocation(invocation_id)
+            return {s["order_index"]: s for s in invocation["steps"]}
+
+        for _ in range(20):
+            if 2 in invocation_steps_by_order_index():
+                break
+            time.sleep(.5)
+
+        steps = invocation_steps_by_order_index()
+        pause_step = steps[2]
+        self.assertIsNone(
+            self.gi.invocations.show_invocation_step(invocation_id, pause_step["id"])["action"])
+        self.gi.invocations.run_invocation_step_action(invocation_id, pause_step["id"], action=True)
+        self.assertTrue(self.gi.invocations.show_invocation_step(invocation_id, pause_step["id"])["action"])
+        for _ in range(20):
+            invocation = self.gi.invocations.show_invocation(invocation_id)
+            if invocation["state"] == "scheduled":
+                break
+
+            time.sleep(.5)
+
+        invocation = self.gi.invocations.show_invocation(invocation_id)
+        self.assertEqual(invocation["state"], "scheduled")