diff env/lib/python3.9/site-packages/cwltool/tests/secondary-files.cwl @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/cwltool/tests/secondary-files.cwl	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,36 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1.0-dev1
+
+requirements:
+  - class: InlineJavascriptRequirement
+  - class: ShellCommandRequirement
+
+class: CommandLineTool
+
+inputs:
+  fasta_path:
+    type: File
+    secondaryFiles:
+      - pattern: ^.fastq
+        required: true
+      - pattern: .crai
+        required: false
+      - .bai?
+      - pattern: "${ return null }"
+
+outputs:
+  bai_list:
+    type: File
+    outputBinding:
+      glob: lsout
+    secondaryFiles:
+      - .bai?
+      - pattern: "${ return null }"
+      - pattern: .crai
+        required: false
+      - pattern: .idx
+
+baseCommand: ["ls"]
+
+stdout: lsout
\ No newline at end of file