Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/seqtk_seq_with_docker.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/seqtk_seq_with_docker.cwl Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,27 @@ +#!/usr/bin/env cwl-runner +cwlVersion: v1.0 +class: CommandLineTool +id: "seqtk_seq" +doc: "Convert to FASTA (seqtk)" +inputs: + - id: input1 + type: File + inputBinding: + position: 1 + prefix: "-a" +outputs: + - id: output1 + type: File + outputBinding: + glob: out +baseCommand: ["seqtk", "seq"] +arguments: [] +stdout: out +hints: + SoftwareRequirement: + packages: + - package: seqtk + version: + - '1.2' + DockerRequirement: + dockerPull: quay.io/biocontainers/seqtk:1.2--0