Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/wf/expect_trick_packed.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
---|---|
date | Mon, 22 Mar 2021 18:12:50 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/wf/expect_trick_packed.cwl Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,142 @@ +{ + "$graph": [ + { + "class": "CommandLineTool", + "doc": "Reverse each line using the `rev` command", + "inputs": [ + { + "type": "File", + "inputBinding": {}, + "id": "#revtool.cwl/revtool_input" + } + ], + "outputs": [ + { + "type": "File", + "outputBinding": { + "glob": "output.txt" + }, + "id": "#revtool.cwl/revtool_output" + } + ], + "baseCommand": "rev", + "stdout": "output.txt", + "id": "#revtool.cwl", + "$namespaces": { + "iana": "https://www.iana.org/assignments/media-types/" + } + }, + { + "class": "CommandLineTool", + "doc": "Sort lines using the `sort` command", + "inputs": [ + { + "id": "#sorttool.cwl/reverse", + "type": "boolean", + "inputBinding": { + "position": 1, + "prefix": "--reverse" + } + }, + { + "id": "#sorttool.cwl/sorted_input", + "type": "File", + "inputBinding": { + "position": 2 + } + } + ], + "outputs": [ + { + "id": "#sorttool.cwl/sorted_output", + "type": "File", + "outputBinding": { + "glob": "output.txt" + } + } + ], + "baseCommand": "sort", + "stdout": "output.txt", + "id": "#sorttool.cwl" + }, + { + "class": "Workflow", + "doc": "Reverse the lines in a document, then sort those lines.", + "hints": [ + { + "class": "DockerRequirement", + "dockerPull": "debian:8" + } + ], + "inputs": [ + { + "type": "string", + "doc": "Here to test for a bug in --pack", + "id": "#main/name" + }, + { + "type": "boolean", + "default": true, + "doc": "If true, reverse (decending) sort", + "id": "#main/reverse_sort" + }, + { + "type": "File", + "doc": "The input file to be processed.", + "format": "https://www.iana.org/assignments/media-types/text/plain", + "default": { + "class": "File", + "location": "hello.txt" + }, + "id": "#main/workflow_input" + } + ], + "outputs": [ + { + "type": "File", + "outputSource": "#main/sorted/sorted_output", + "doc": "The output with the lines reversed and sorted.", + "id": "#main/sorted_output" + } + ], + "steps": [ + { + "in": [ + { + "source": "#main/workflow_input", + "id": "#main/rev/revtool_input" + } + ], + "out": [ + "#main/rev/revtool_output" + ], + "run": "#revtool.cwl", + "id": "#main/rev" + }, + { + "in": [ + { + "source": "#main/reverse_sort", + "id": "#main/sorted/reverse" + }, + { + "source": "#main/rev/revtool_output", + "id": "#main/sorted/sorted_input" + } + ], + "out": [ + "#main/sorted/sorted_output" + ], + "run": "#sorttool.cwl", + "id": "#main/sorted" + } + ], + "id": "#main" + } + ], + "cwlVersion": "v1.0", + "$schemas": [ + "empty2.ttl", + "empty.ttl" + ] +} \ No newline at end of file