Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/galaxy/tool_util/cwl/runnable.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/galaxy/tool_util/cwl/runnable.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,34 @@ +"""Lighter-weight variant of Planemo runnable outputs.""" +from galaxy.tool_util.parser import get_tool_source +from .parser import workflow_proxy +from .util import guess_artifact_type + + +def get_outputs(path): + tool_or_workflow = guess_artifact_type(path) + if tool_or_workflow == "tool": + tool_source = get_tool_source(path) + output_datasets, _ = tool_source.parse_outputs(None) + outputs = [ToolOutput(o) for o in output_datasets.values()] + return outputs + else: + workflow = workflow_proxy(path, strict_cwl_validation=False) + return [CwlWorkflowOutput(label) for label in workflow.output_labels] + + +class CwlWorkflowOutput: + + def __init__(self, label): + self._label = label + + def get_id(self): + return self._label + + +class ToolOutput: + + def __init__(self, tool_output): + self._tool_output = tool_output + + def get_id(self): + return self._tool_output.name