diff env/lib/python3.9/site-packages/networkx/readwrite/json_graph/adjacency.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/networkx/readwrite/json_graph/adjacency.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,156 @@
+from itertools import chain
+import networkx as nx
+
+__all__ = ["adjacency_data", "adjacency_graph"]
+
+_attrs = dict(id="id", key="key")
+
+
+def adjacency_data(G, attrs=_attrs):
+    """Returns data in adjacency format that is suitable for JSON serialization
+    and use in Javascript documents.
+
+    Parameters
+    ----------
+    G : NetworkX graph
+
+    attrs : dict
+        A dictionary that contains two keys 'id' and 'key'. The corresponding
+        values provide the attribute names for storing NetworkX-internal graph
+        data. The values should be unique. Default value:
+        :samp:`dict(id='id', key='key')`.
+
+        If some user-defined graph data use these attribute names as data keys,
+        they may be silently dropped.
+
+    Returns
+    -------
+    data : dict
+       A dictionary with adjacency formatted data.
+
+    Raises
+    ------
+    NetworkXError
+        If values in attrs are not unique.
+
+    Examples
+    --------
+    >>> from networkx.readwrite import json_graph
+    >>> G = nx.Graph([(1, 2)])
+    >>> data = json_graph.adjacency_data(G)
+
+    To serialize with json
+
+    >>> import json
+    >>> s = json.dumps(data)
+
+    Notes
+    -----
+    Graph, node, and link attributes will be written when using this format
+    but attribute keys must be strings if you want to serialize the resulting
+    data with JSON.
+
+    The default value of attrs will be changed in a future release of NetworkX.
+
+    See Also
+    --------
+    adjacency_graph, node_link_data, tree_data
+    """
+    multigraph = G.is_multigraph()
+    id_ = attrs["id"]
+    # Allow 'key' to be omitted from attrs if the graph is not a multigraph.
+    key = None if not multigraph else attrs["key"]
+    if id_ == key:
+        raise nx.NetworkXError("Attribute names are not unique.")
+    data = {}
+    data["directed"] = G.is_directed()
+    data["multigraph"] = multigraph
+    data["graph"] = list(G.graph.items())
+    data["nodes"] = []
+    data["adjacency"] = []
+    for n, nbrdict in G.adjacency():
+        data["nodes"].append(dict(chain(G.nodes[n].items(), [(id_, n)])))
+        adj = []
+        if multigraph:
+            for nbr, keys in nbrdict.items():
+                for k, d in keys.items():
+                    adj.append(dict(chain(d.items(), [(id_, nbr), (key, k)])))
+        else:
+            for nbr, d in nbrdict.items():
+                adj.append(dict(chain(d.items(), [(id_, nbr)])))
+        data["adjacency"].append(adj)
+    return data
+
+
+def adjacency_graph(data, directed=False, multigraph=True, attrs=_attrs):
+    """Returns graph from adjacency data format.
+
+    Parameters
+    ----------
+    data : dict
+        Adjacency list formatted graph data
+
+    Returns
+    -------
+    G : NetworkX graph
+       A NetworkX graph object
+
+    directed : bool
+        If True, and direction not specified in data, return a directed graph.
+
+    multigraph : bool
+        If True, and multigraph not specified in data, return a multigraph.
+
+    attrs : dict
+        A dictionary that contains two keys 'id' and 'key'. The corresponding
+        values provide the attribute names for storing NetworkX-internal graph
+        data. The values should be unique. Default value:
+        :samp:`dict(id='id', key='key')`.
+
+    Examples
+    --------
+    >>> from networkx.readwrite import json_graph
+    >>> G = nx.Graph([(1, 2)])
+    >>> data = json_graph.adjacency_data(G)
+    >>> H = json_graph.adjacency_graph(data)
+
+    Notes
+    -----
+    The default value of attrs will be changed in a future release of NetworkX.
+
+    See Also
+    --------
+    adjacency_graph, node_link_data, tree_data
+    """
+    multigraph = data.get("multigraph", multigraph)
+    directed = data.get("directed", directed)
+    if multigraph:
+        graph = nx.MultiGraph()
+    else:
+        graph = nx.Graph()
+    if directed:
+        graph = graph.to_directed()
+    id_ = attrs["id"]
+    # Allow 'key' to be omitted from attrs if the graph is not a multigraph.
+    key = None if not multigraph else attrs["key"]
+    graph.graph = dict(data.get("graph", []))
+    mapping = []
+    for d in data["nodes"]:
+        node_data = d.copy()
+        node = node_data.pop(id_)
+        mapping.append(node)
+        graph.add_node(node)
+        graph.nodes[node].update(node_data)
+    for i, d in enumerate(data["adjacency"]):
+        source = mapping[i]
+        for tdata in d:
+            target_data = tdata.copy()
+            target = target_data.pop(id_)
+            if not multigraph:
+                graph.add_edge(source, target)
+                graph[source][target].update(tdata)
+            else:
+                ky = target_data.pop(key, None)
+                graph.add_edge(source, target, key=ky)
+                graph[source][target][ky].update(tdata)
+    return graph