diff env/lib/python3.9/site-packages/networkx/readwrite/tests/test_edgelist.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/networkx/readwrite/tests/test_edgelist.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,275 @@
+"""
+    Unit tests for edgelists.
+"""
+import pytest
+import io
+import tempfile
+import os
+
+import networkx as nx
+from networkx.testing import assert_edges_equal, assert_nodes_equal, assert_graphs_equal
+
+
+class TestEdgelist:
+    @classmethod
+    def setup_class(cls):
+        cls.G = nx.Graph(name="test")
+        e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")]
+        cls.G.add_edges_from(e)
+        cls.G.add_node("g")
+        cls.DG = nx.DiGraph(cls.G)
+        cls.XG = nx.MultiGraph()
+        cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)])
+        cls.XDG = nx.MultiDiGraph(cls.XG)
+
+    def test_read_edgelist_1(self):
+        s = b"""\
+# comment line
+1 2
+# comment line
+2 3
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int)
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+    def test_read_edgelist_2(self):
+        s = b"""\
+# comment line
+1 2 2.0
+# comment line
+2 3 3.0
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=False)
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+        bytesIO = io.BytesIO(s)
+        G = nx.read_weighted_edgelist(bytesIO, nodetype=int)
+        assert_edges_equal(
+            G.edges(data=True), [(1, 2, {"weight": 2.0}), (2, 3, {"weight": 3.0})]
+        )
+
+    def test_read_edgelist_3(self):
+        s = b"""\
+# comment line
+1 2 {'weight':2.0}
+# comment line
+2 3 {'weight':3.0}
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=False)
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=True)
+        assert_edges_equal(
+            G.edges(data=True), [(1, 2, {"weight": 2.0}), (2, 3, {"weight": 3.0})]
+        )
+
+    def test_read_edgelist_4(self):
+        s = b"""\
+# comment line
+1 2 {'weight':2.0}
+# comment line
+2 3 {'weight':3.0}
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=False)
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=True)
+        assert_edges_equal(
+            G.edges(data=True), [(1, 2, {"weight": 2.0}), (2, 3, {"weight": 3.0})]
+        )
+
+        s = """\
+# comment line
+1 2 {'weight':2.0}
+# comment line
+2 3 {'weight':3.0}
+"""
+        StringIO = io.StringIO(s)
+        G = nx.read_edgelist(StringIO, nodetype=int, data=False)
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+        StringIO = io.StringIO(s)
+        G = nx.read_edgelist(StringIO, nodetype=int, data=True)
+        assert_edges_equal(
+            G.edges(data=True), [(1, 2, {"weight": 2.0}), (2, 3, {"weight": 3.0})]
+        )
+
+    def test_read_edgelist_5(self):
+        s = b"""\
+# comment line
+1 2 {'weight':2.0, 'color':'green'}
+# comment line
+2 3 {'weight':3.0, 'color':'red'}
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=False)
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=True)
+        assert_edges_equal(
+            G.edges(data=True),
+            [
+                (1, 2, {"weight": 2.0, "color": "green"}),
+                (2, 3, {"weight": 3.0, "color": "red"}),
+            ],
+        )
+
+    def test_read_edgelist_6(self):
+        s = b"""\
+# comment line
+1, 2, {'weight':2.0, 'color':'green'}
+# comment line
+2, 3, {'weight':3.0, 'color':'red'}
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=False, delimiter=",")
+        assert_edges_equal(G.edges(), [(1, 2), (2, 3)])
+
+        bytesIO = io.BytesIO(s)
+        G = nx.read_edgelist(bytesIO, nodetype=int, data=True, delimiter=",")
+        assert_edges_equal(
+            G.edges(data=True),
+            [
+                (1, 2, {"weight": 2.0, "color": "green"}),
+                (2, 3, {"weight": 3.0, "color": "red"}),
+            ],
+        )
+
+    def test_write_edgelist_1(self):
+        fh = io.BytesIO()
+        G = nx.OrderedGraph()
+        G.add_edges_from([(1, 2), (2, 3)])
+        nx.write_edgelist(G, fh, data=False)
+        fh.seek(0)
+        assert fh.read() == b"1 2\n2 3\n"
+
+    def test_write_edgelist_2(self):
+        fh = io.BytesIO()
+        G = nx.OrderedGraph()
+        G.add_edges_from([(1, 2), (2, 3)])
+        nx.write_edgelist(G, fh, data=True)
+        fh.seek(0)
+        assert fh.read() == b"1 2 {}\n2 3 {}\n"
+
+    def test_write_edgelist_3(self):
+        fh = io.BytesIO()
+        G = nx.OrderedGraph()
+        G.add_edge(1, 2, weight=2.0)
+        G.add_edge(2, 3, weight=3.0)
+        nx.write_edgelist(G, fh, data=True)
+        fh.seek(0)
+        assert fh.read() == b"1 2 {'weight': 2.0}\n2 3 {'weight': 3.0}\n"
+
+    def test_write_edgelist_4(self):
+        fh = io.BytesIO()
+        G = nx.OrderedGraph()
+        G.add_edge(1, 2, weight=2.0)
+        G.add_edge(2, 3, weight=3.0)
+        nx.write_edgelist(G, fh, data=[("weight")])
+        fh.seek(0)
+        assert fh.read() == b"1 2 2.0\n2 3 3.0\n"
+
+    def test_unicode(self):
+        G = nx.Graph()
+        name1 = chr(2344) + chr(123) + chr(6543)
+        name2 = chr(5543) + chr(1543) + chr(324)
+        G.add_edge(name1, "Radiohead", **{name2: 3})
+        fd, fname = tempfile.mkstemp()
+        nx.write_edgelist(G, fname)
+        H = nx.read_edgelist(fname)
+        assert_graphs_equal(G, H)
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_latin1_issue(self):
+        G = nx.Graph()
+        name1 = chr(2344) + chr(123) + chr(6543)
+        name2 = chr(5543) + chr(1543) + chr(324)
+        G.add_edge(name1, "Radiohead", **{name2: 3})
+        fd, fname = tempfile.mkstemp()
+        pytest.raises(
+            UnicodeEncodeError, nx.write_edgelist, G, fname, encoding="latin-1"
+        )
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_latin1(self):
+        G = nx.Graph()
+        name1 = "Bj" + chr(246) + "rk"
+        name2 = chr(220) + "ber"
+        G.add_edge(name1, "Radiohead", **{name2: 3})
+        fd, fname = tempfile.mkstemp()
+        nx.write_edgelist(G, fname, encoding="latin-1")
+        H = nx.read_edgelist(fname, encoding="latin-1")
+        assert_graphs_equal(G, H)
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_edgelist_graph(self):
+        G = self.G
+        (fd, fname) = tempfile.mkstemp()
+        nx.write_edgelist(G, fname)
+        H = nx.read_edgelist(fname)
+        H2 = nx.read_edgelist(fname)
+        assert H != H2  # they should be different graphs
+        G.remove_node("g")  # isolated nodes are not written in edgelist
+        assert_nodes_equal(list(H), list(G))
+        assert_edges_equal(list(H.edges()), list(G.edges()))
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_edgelist_digraph(self):
+        G = self.DG
+        (fd, fname) = tempfile.mkstemp()
+        nx.write_edgelist(G, fname)
+        H = nx.read_edgelist(fname, create_using=nx.DiGraph())
+        H2 = nx.read_edgelist(fname, create_using=nx.DiGraph())
+        assert H != H2  # they should be different graphs
+        G.remove_node("g")  # isolated nodes are not written in edgelist
+        assert_nodes_equal(list(H), list(G))
+        assert_edges_equal(list(H.edges()), list(G.edges()))
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_edgelist_integers(self):
+        G = nx.convert_node_labels_to_integers(self.G)
+        (fd, fname) = tempfile.mkstemp()
+        nx.write_edgelist(G, fname)
+        H = nx.read_edgelist(fname, nodetype=int)
+        # isolated nodes are not written in edgelist
+        G.remove_nodes_from(list(nx.isolates(G)))
+        assert_nodes_equal(list(H), list(G))
+        assert_edges_equal(list(H.edges()), list(G.edges()))
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_edgelist_multigraph(self):
+        G = self.XG
+        (fd, fname) = tempfile.mkstemp()
+        nx.write_edgelist(G, fname)
+        H = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiGraph())
+        H2 = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiGraph())
+        assert H != H2  # they should be different graphs
+        assert_nodes_equal(list(H), list(G))
+        assert_edges_equal(list(H.edges()), list(G.edges()))
+        os.close(fd)
+        os.unlink(fname)
+
+    def test_edgelist_multidigraph(self):
+        G = self.XDG
+        (fd, fname) = tempfile.mkstemp()
+        nx.write_edgelist(G, fname)
+        H = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiDiGraph())
+        H2 = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiDiGraph())
+        assert H != H2  # they should be different graphs
+        assert_nodes_equal(list(H), list(G))
+        assert_edges_equal(list(H.edges()), list(G.edges()))
+        os.close(fd)
+        os.unlink(fname)