diff env/lib/python3.9/site-packages/planemo/linters/biocontainer_registered.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/planemo/linters/biocontainer_registered.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,32 @@
+"""Ensure best-practice biocontainer registered for this tool."""
+
+from galaxy.tool_util.deps.container_resolvers.mulled import targets_to_mulled_name
+from galaxy.tool_util.deps.mulled.util import build_target
+
+from planemo.conda import tool_source_conda_targets
+
+MESSAGE_WARN_NO_REQUIREMENTS = "No valid package requirement tags found to infer BioContainer from."
+MESSAGE_WARN_NO_CONTAINER = "Failed to find a BioContainer registered for these requirements."
+MESSAGE_INFO_FOUND_BIOCONTAINER = "BioContainer best-practice container found [%s]."
+
+lint_tool_types = ["*"]
+
+
+def lint_biocontainer_registered(tool_source, lint_ctx):
+    conda_targets = tool_source_conda_targets(tool_source)
+    if not conda_targets:
+        lint_ctx.warn(MESSAGE_WARN_NO_REQUIREMENTS)
+        return
+
+    mulled_targets = [build_target(c.package, c.version) for c in conda_targets]
+    name = mulled_container_name("biocontainers", mulled_targets)
+    if name:
+        lint_ctx.info(MESSAGE_INFO_FOUND_BIOCONTAINER % name)
+    else:
+        lint_ctx.warn(MESSAGE_WARN_NO_CONTAINER)
+
+
+def mulled_container_name(namespace, targets):
+    name = targets_to_mulled_name(targets=targets, hash_func="v2", namespace=namespace)
+    if name:
+        return "quay.io/%s/%s" % (namespace, name)