view env/bin/sdbadmin @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

#!/Users/cmdms/OneDrive-UOB/Development/Projects/2021/sam-consensus-v3/env/bin/python3
# Copyright (c) 2009 Chris Moyer http://kopertop.blogspot.com/
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge, publish, dis-
# tribute, sublicense, and/or sell copies of the Software, and to permit
# persons to whom the Software is furnished to do so, subject to the fol-
# lowing conditions:
#
# The above copyright notice and this permission notice shall be included
# in all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, 
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS

#
# Tools to dump and recover an SDB domain
#
VERSION = "%prog version 1.0"
import boto
import time
from boto import sdb
from boto.compat import json

def choice_input(options, default=None, title=None):
    """
    Choice input
    """
    if title == None:
        title = "Please choose"
    print title
    objects = []
    for n, obj in enumerate(options):
        print "%s: %s" % (n, obj)
        objects.append(obj)
    choice = int(raw_input(">>> "))
    try:
        choice = objects[choice]
    except:
        choice = default
    return choice

def confirm(message="Are you sure?"):
    choice = raw_input("%s [yN] " % message)
    return choice and len(choice) > 0 and choice[0].lower() == "y"


def dump_db(domain, file_name, use_json=False, sort_attributes=False):
    """
    Dump SDB domain to file
    """
    f = open(file_name, "w")
    if use_json:
        for item in domain:
            data = {"name": item.name, "attributes": item}
            print >> f, json.dumps(data, sort_keys=sort_attributes)
    else:
        doc = domain.to_xml(f)

def empty_db(domain):
    """
    Remove all entries from domain
    """
    for item in domain:
        item.delete()

def load_db(domain, file, use_json=False):
    """
    Load a domain from a file, this doesn't overwrite any existing
    data in the file so if you want to do a full recovery and restore
    you need to call empty_db before calling this

    :param domain: The SDB Domain object to load to
    :param file: The File to load the DB from
    """
    if use_json:
        for line in file.readlines():
            if line:
                data = json.loads(line)
                item = domain.new_item(data['name'])
                item.update(data['attributes'])
                item.save()
                
    else:
        domain.from_xml(file)

def check_valid_region(conn, region):
    if conn is None:
        print 'Invalid region (%s)' % region
        sys.exit(1)

def create_db(domain_name, region_name):
    """Create a new DB

    :param domain: Name of the domain to create
    :type domain: str
    """
    sdb = boto.sdb.connect_to_region(region_name)
    check_valid_region(sdb, region_name)
    return sdb.create_domain(domain_name)

if __name__ == "__main__":
    from optparse import OptionParser
    parser = OptionParser(version=VERSION, usage="Usage: %prog [--dump|--load|--empty|--list|-l] [options]")

    # Commands
    parser.add_option("--dump", help="Dump domain to file", dest="dump", default=False, action="store_true")
    parser.add_option("--load", help="Load domain contents from file", dest="load", default=False, action="store_true")
    parser.add_option("--empty", help="Empty all contents of domain", dest="empty", default=False, action="store_true")
    parser.add_option("-l", "--list", help="List All domains", dest="list", default=False, action="store_true")
    parser.add_option("-c", "--create", help="Create domain", dest="create", default=False, action="store_true")

    parser.add_option("-a", "--all-domains", help="Operate on all domains", action="store_true", default=False, dest="all_domains")
    if json:
        parser.add_option("-j", "--use-json", help="Load/Store as JSON instead of XML", action="store_true", default=False, dest="json")
    parser.add_option("-s", "--sort-attibutes", help="Sort the element attributes", action="store_true", default=False, dest="sort_attributes")
    parser.add_option("-d", "--domain", help="Do functions on domain (may be more then one)", action="append", dest="domains")
    parser.add_option("-f", "--file", help="Input/Output file we're operating on", dest="file_name")
    parser.add_option("-r", "--region", help="Region (e.g. us-east-1[default] or eu-west-1)", default="us-east-1", dest="region_name")
    (options, args) = parser.parse_args()

    if options.create:
        for domain_name in options.domains:
            create_db(domain_name, options.region_name)
        exit()

    sdb = boto.sdb.connect_to_region(options.region_name)
    check_valid_region(sdb, options.region_name)
    if options.list:
        for db in sdb.get_all_domains():
            print db
        exit()

    if not options.dump and not options.load and not options.empty:
            parser.print_help()
            exit()




    #
    # Setup
    #
    if options.domains:
        domains = []
        for domain_name in options.domains:
            domains.append(sdb.get_domain(domain_name))
    elif options.all_domains:
        domains = sdb.get_all_domains()
    else:
        domains = [choice_input(options=sdb.get_all_domains(), title="No domain specified, please choose one")]


    #
    # Execute the commands
    #
    stime = time.time()
    if options.empty:
        if confirm("WARNING!!! Are you sure you want to empty the following domains?: %s" % domains):
            stime = time.time()
            for domain in domains:
                print "--------> Emptying %s <--------" % domain.name
                empty_db(domain)
        else:
            print "Canceling operations"
            exit()

    if options.dump:
        for domain in domains:
            print "--------> Dumping %s <---------" % domain.name
            if options.file_name:
                file_name = options.file_name
            else:
                file_name = "%s.db" % domain.name
            dump_db(domain, file_name, options.json, options.sort_attributes)

    if options.load:
        for domain in domains:
            print "---------> Loading %s <----------" % domain.name
            if options.file_name:
                file_name = options.file_name
            else:
                file_name = "%s.db" % domain.name
            load_db(domain, open(file_name, "rb"), options.json)


    total_time = round(time.time() - stime, 2)
    print "--------> Finished in %s <--------" % total_time