Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/cwltool/task_queue.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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# Copyright (C) The Arvados Authors. All rights reserved. # # SPDX-License-Identifier: Apache-2.0 """TaskQueue.""" import queue import threading from typing import Callable, Optional from .loghandler import _logger class TaskQueue: """A TaskQueue class. Uses a first-in, first-out queue of tasks executed on a fixed number of threads. New tasks enter the queue and are started in the order received, as worker threads become available. If thread_count == 0 then tasks will be synchronously executed when add() is called (this makes the actual task queue behavior a no-op, but may be a useful configuration knob). The thread_count is also used as the maximum size of the queue. The threads are created during TaskQueue initialization. Call join() when you're done with the TaskQueue and want the threads to stop. Attributes ---------- in_flight the number of tasks in the queue """ def __init__(self, lock: threading.Lock, thread_count: int): """Create a new task queue using the specified lock and number of threads.""" self.thread_count = thread_count self.task_queue: queue.Queue[Optional[Callable[[], None]]] = queue.Queue( maxsize=self.thread_count ) self.task_queue_threads = [] self.lock = lock self.in_flight = 0 self.error: Optional[BaseException] = None for _r in range(0, self.thread_count): t = threading.Thread(target=self._task_queue_func) self.task_queue_threads.append(t) t.start() def _task_queue_func(self) -> None: while True: task = self.task_queue.get() if task is None: return try: task() except BaseException as e: _logger.exception("Unhandled exception running task") self.error = e finally: with self.lock: self.in_flight -= 1 def add( self, task: Callable[[], None], unlock: Optional[threading.Condition] = None, check_done: Optional[threading.Event] = None, ) -> None: """ Add your task to the queue. The optional unlock will be released prior to attempting to add the task to the queue. If the optional "check_done" threading.Event's flag is set, then we will skip adding this task to the queue. If the TaskQueue was created with thread_count == 0 then your task will be synchronously executed. """ if self.thread_count == 0: task() return with self.lock: self.in_flight += 1 while True: try: if unlock is not None: unlock.release() if check_done is not None and check_done.is_set(): with self.lock: self.in_flight -= 1 return self.task_queue.put(task, block=True, timeout=3) return except queue.Full: pass finally: if unlock is not None: unlock.acquire() def drain(self) -> None: """Drain the queue.""" try: while not self.task_queue.empty(): self.task_queue.get(True, 0.1) except queue.Empty: pass def join(self) -> None: """Wait for all threads to complete.""" for _t in self.task_queue_threads: self.task_queue.put(None) for t in self.task_queue_threads: t.join()