Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/cwltool/tests/wf/sorttool.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
---|---|
date | Mon, 22 Mar 2021 18:12:50 +0000 |
parents | |
children |
line wrap: on
line source
#!/usr/bin/env cwl-runner # Example command line program wrapper for the Unix tool "sort" # demonstrating command line flags. class: CommandLineTool doc: "Sort lines using the `sort` command" cwlVersion: v1.0 # This example is similar to the previous one, with an additional input # parameter called "reverse". It is a boolean parameter, which is # intepreted as a command line flag. The value of "prefix" is used for # flag to put on the command line if "reverse" is true, if "reverse" is # false, no flag is added. # # This example also introduced the "position" field. This indicates the # sorting order of items on the command line. Lower numbers are placed # before higher numbers. Here, the "--reverse" flag (if present) will be # added to the command line before the input file path. inputs: - id: reverse type: boolean inputBinding: position: 1 prefix: "--reverse" - id: sorted_input type: File inputBinding: position: 2 outputs: - id: sorted_output type: File outputBinding: glob: output.txt baseCommand: sort stdout: output.txt