view env/lib/python3.9/site-packages/networkx/readwrite/tests/test_sparse6.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

from io import BytesIO
import tempfile
import pytest

import networkx as nx
from networkx.testing.utils import assert_edges_equal
from networkx.testing.utils import assert_nodes_equal


class TestSparseGraph6:
    def test_from_sparse6_bytes(self):
        data = b":Q___eDcdFcDeFcE`GaJ`IaHbKNbLM"
        G = nx.from_sparse6_bytes(data)
        assert_nodes_equal(
            sorted(G.nodes()),
            [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17],
        )
        assert_edges_equal(
            G.edges(),
            [
                (0, 1),
                (0, 2),
                (0, 3),
                (1, 12),
                (1, 14),
                (2, 13),
                (2, 15),
                (3, 16),
                (3, 17),
                (4, 7),
                (4, 9),
                (4, 11),
                (5, 6),
                (5, 8),
                (5, 9),
                (6, 10),
                (6, 11),
                (7, 8),
                (7, 10),
                (8, 12),
                (9, 15),
                (10, 14),
                (11, 13),
                (12, 16),
                (13, 17),
                (14, 17),
                (15, 16),
            ],
        )

    def test_from_bytes_multigraph_graph(self):
        graph_data = b":An"
        G = nx.from_sparse6_bytes(graph_data)
        assert type(G) == nx.Graph
        multigraph_data = b":Ab"
        M = nx.from_sparse6_bytes(multigraph_data)
        assert type(M) == nx.MultiGraph

    def test_read_sparse6(self):
        data = b":Q___eDcdFcDeFcE`GaJ`IaHbKNbLM"
        G = nx.from_sparse6_bytes(data)
        fh = BytesIO(data)
        Gin = nx.read_sparse6(fh)
        assert_nodes_equal(G.nodes(), Gin.nodes())
        assert_edges_equal(G.edges(), Gin.edges())

    def test_read_many_graph6(self):
        # Read many graphs into list
        data = b":Q___eDcdFcDeFcE`GaJ`IaHbKNbLM\n" b":Q___dCfDEdcEgcbEGbFIaJ`JaHN`IM"
        fh = BytesIO(data)
        glist = nx.read_sparse6(fh)
        assert len(glist) == 2
        for G in glist:
            assert_nodes_equal(
                G.nodes(),
                [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17],
            )


class TestWriteSparse6:
    """Unit tests for writing graphs in the sparse6 format.

    Most of the test cases were checked against the sparse6 encoder in Sage.

    """

    def test_null_graph(self):
        G = nx.null_graph()
        result = BytesIO()
        nx.write_sparse6(G, result)
        assert result.getvalue() == b">>sparse6<<:?\n"

    def test_trivial_graph(self):
        G = nx.trivial_graph()
        result = BytesIO()
        nx.write_sparse6(G, result)
        assert result.getvalue() == b">>sparse6<<:@\n"

    def test_empty_graph(self):
        G = nx.empty_graph(5)
        result = BytesIO()
        nx.write_sparse6(G, result)
        assert result.getvalue() == b">>sparse6<<:D\n"

    def test_large_empty_graph(self):
        G = nx.empty_graph(68)
        result = BytesIO()
        nx.write_sparse6(G, result)
        assert result.getvalue() == b">>sparse6<<:~?@C\n"

    def test_very_large_empty_graph(self):
        G = nx.empty_graph(258049)
        result = BytesIO()
        nx.write_sparse6(G, result)
        assert result.getvalue() == b">>sparse6<<:~~???~?@\n"

    def test_complete_graph(self):
        G = nx.complete_graph(4)
        result = BytesIO()
        nx.write_sparse6(G, result)
        assert result.getvalue() == b">>sparse6<<:CcKI\n"

    def test_no_header(self):
        G = nx.complete_graph(4)
        result = BytesIO()
        nx.write_sparse6(G, result, header=False)
        assert result.getvalue() == b":CcKI\n"

    def test_padding(self):
        codes = (b":Cdv", b":DaYn", b":EaYnN", b":FaYnL", b":GaYnLz")
        for n, code in enumerate(codes, start=4):
            G = nx.path_graph(n)
            result = BytesIO()
            nx.write_sparse6(G, result, header=False)
            assert result.getvalue() == code + b"\n"

    def test_complete_bipartite(self):
        G = nx.complete_bipartite_graph(6, 9)
        result = BytesIO()
        nx.write_sparse6(G, result)
        # Compared with sage
        expected = b">>sparse6<<:Nk" + b"?G`cJ" * 9 + b"\n"
        assert result.getvalue() == expected

    def test_read_write_inverse(self):
        for i in list(range(13)) + [31, 47, 62, 63, 64, 72]:
            m = min(2 * i, i * i // 2)
            g = nx.random_graphs.gnm_random_graph(i, m, seed=i)
            gstr = BytesIO()
            nx.write_sparse6(g, gstr, header=False)
            # Strip the trailing newline.
            gstr = gstr.getvalue().rstrip()
            g2 = nx.from_sparse6_bytes(gstr)
            assert g2.order() == g.order()
            assert_edges_equal(g2.edges(), g.edges())

    def test_no_directed_graphs(self):
        with pytest.raises(nx.NetworkXNotImplemented):
            nx.write_sparse6(nx.DiGraph(), BytesIO())

    def test_write_path(self):
        # On Windows, we can't reopen a file that is open
        # So, for test we get a valid name from tempfile but close it.
        with tempfile.NamedTemporaryFile() as f:
            fullfilename = f.name
        # file should be closed now, so write_sparse6 can open it
        nx.write_sparse6(nx.null_graph(), fullfilename)
        fh = open(fullfilename, mode="rb")
        assert fh.read() == b">>sparse6<<:?\n"
        fh.close()
        import os

        os.remove(fullfilename)