view env/share/doc/networkx-2.5/examples/subclass/plot_printgraph.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

"""
===========
Print Graph
===========

Example subclass of the Graph class.
"""

import matplotlib.pyplot as plt
import networkx as nx
from networkx import Graph


class PrintGraph(Graph):
    """
    Example subclass of the Graph class.

    Prints activity log to file or standard output.
    """

    def __init__(self, data=None, name="", file=None, **attr):
        Graph.__init__(self, data=data, name=name, **attr)
        if file is None:
            import sys

            self.fh = sys.stdout
        else:
            self.fh = open(file, "w")

    def add_node(self, n, attr_dict=None, **attr):
        Graph.add_node(self, n, attr_dict=attr_dict, **attr)
        self.fh.write(f"Add node: {n}\n")

    def add_nodes_from(self, nodes, **attr):
        for n in nodes:
            self.add_node(n, **attr)

    def remove_node(self, n):
        Graph.remove_node(self, n)
        self.fh.write(f"Remove node: {n}\n")

    def remove_nodes_from(self, nodes):
        for n in nodes:
            self.remove_node(n)

    def add_edge(self, u, v, attr_dict=None, **attr):
        Graph.add_edge(self, u, v, attr_dict=attr_dict, **attr)
        self.fh.write(f"Add edge: {u}-{v}\n")

    def add_edges_from(self, ebunch, attr_dict=None, **attr):
        for e in ebunch:
            u, v = e[0:2]
            self.add_edge(u, v, attr_dict=attr_dict, **attr)

    def remove_edge(self, u, v):
        Graph.remove_edge(self, u, v)
        self.fh.write(f"Remove edge: {u}-{v}\n")

    def remove_edges_from(self, ebunch):
        for e in ebunch:
            u, v = e[0:2]
            self.remove_edge(u, v)

    def clear(self):
        Graph.clear(self)
        self.fh.write("Clear graph\n")


G = PrintGraph()
G.add_node("foo")
G.add_nodes_from("bar", weight=8)
G.remove_node("b")
G.remove_nodes_from("ar")
print("Nodes in G: ", G.nodes(data=True))
G.add_edge(0, 1, weight=10)
print("Edges in G: ", G.edges(data=True))
G.remove_edge(0, 1)
G.add_edges_from(zip(range(0, 3), range(1, 4)), weight=10)
print("Edges in G: ", G.edges(data=True))
G.remove_edges_from(zip(range(0, 3), range(1, 4)))
print("Edges in G: ", G.edges(data=True))

G = PrintGraph()
nx.add_path(G, range(10))
nx.add_star(G, range(9, 13))
nx.draw(G)
plt.show()