view env/lib/python3.9/site-packages/cwltool/tests/seqtk_seq.cwl @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
id: "seqtk_seq"
doc: "Convert to FASTA (seqtk)"
inputs:
  - id: input1
    type: File
    inputBinding:
      position: 1
      prefix: "-a"
outputs:
  - id: output1
    type: File
    outputBinding:
      glob: out
baseCommand: ["seqtk", "seq"]
arguments: []
stdout: out
hints:
  SoftwareRequirement:
    packages:
    - package: seqtk
      version:
      - r93