Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/cwltool/tests/test_trs.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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from typing import Any, Optional from unittest import mock from unittest.mock import MagicMock from cwltool.main import main from .util import get_data class MockResponse1: def __init__( self, json_data: Any, status_code: int, raise_for_status: Optional[bool] = None ) -> None: """Create a fake return object for requests.Session.head.""" self.json_data = json_data self.status_code = status_code self.raise_for_status = mock.Mock() self.raise_for_status.side_effect = raise_for_status def json(self) -> Any: return self.json_data def mocked_requests_head(*args: Any) -> MockResponse1: return MockResponse1(None, 200) class MockResponse2: def __init__( self, json_data: Any, status_code: int, raise_for_status: Optional[bool] = None ) -> None: """Create a fake return object for requests.Session.get.""" self.json_data = json_data self.text = json_data self.status_code = status_code self.raise_for_status = mock.Mock() self.raise_for_status.side_effect = raise_for_status def json(self) -> Any: return self.json_data headers = {"content-type": "text/plain"} def mocked_requests_get(*args: Any, **kwargs: Any) -> MockResponse2: if ( args[0] == "https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/CWL/files" ): return MockResponse2( [ {"file_type": "CONTAINERFILE", "path": "Dockerfile"}, {"file_type": "PRIMARY_DESCRIPTOR", "path": "Dockstore.cwl"}, {"file_type": "TEST_FILE", "path": "test.json"}, ], 200, ) elif ( args[0] == "https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/plain-CWL/descriptor/Dockstore.cwl" ): string = open(get_data("tests/trs/Dockstore.cwl")).read() return MockResponse2(string, 200) elif ( args[0] == "https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-tool.cwl" ): string = open(get_data("tests/trs/md5sum-tool.cwl")).read() return MockResponse2(string, 200) elif ( args[0] == "https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl" ): string = open(get_data("tests/trs/md5sum-workflow.cwl")).read() return MockResponse2(string, 200) elif ( args[0] == "https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/CWL/files" ): return MockResponse2( [ {"file_type": "TEST_FILE", "path": "md5sum-input-cwl.json"}, {"file_type": "SECONDARY_DESCRIPTOR", "path": "md5sum-tool.cwl"}, {"file_type": "PRIMARY_DESCRIPTOR", "path": "md5sum-workflow.cwl"}, ], 200, ) print("A mocked call to TRS missed, target was %s", args[0]) return MockResponse2(None, 404) @mock.patch("requests.Session.head", side_effect=mocked_requests_head) @mock.patch("requests.Session.get", side_effect=mocked_requests_get) def test_tool_trs_template(mock_head: MagicMock, mock_get: MagicMock) -> None: params = ["--make-template", r"quay.io/briandoconnor/dockstore-tool-md5sum:1.0.4"] return_value = main(params) mock_head.assert_called() mock_get.assert_called() assert return_value == 0 @mock.patch("requests.Session.head", side_effect=mocked_requests_head) @mock.patch("requests.Session.get", side_effect=mocked_requests_get) def test_workflow_trs_template(mock_head: MagicMock, mock_get: MagicMock) -> None: params = [ "--make-template", r"#workflow/github.com/dockstore-testing/md5sum-checker:develop", ] return_value = main(params) mock_head.assert_called() mock_get.assert_called() assert return_value == 0