Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/planemo/linters/xsd.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Tool linting module that lints Galaxy tool against experimental XSD.""" import copy import os import tempfile import galaxy.tool_util import planemo.lint TOOL_XSD = os.path.join(os.path.dirname(galaxy.tool_util.__file__), 'xsd', "galaxy.xsd") def lint_tool_xsd(tool_xml, lint_ctx): """Write a temp file out and lint it.""" with tempfile.NamedTemporaryFile() as tf: _clean_root(tool_xml).write(tf.name) planemo.lint.lint_xsd(lint_ctx, TOOL_XSD, tf.name) def _clean_root(tool_xml): """XSD assumes macros have been expanded, so remove them.""" clean_tool_xml = copy.deepcopy(tool_xml) to_remove = [] for macros_el in clean_tool_xml.getroot().findall("macros"): to_remove.append(macros_el) for macros_el in to_remove: clean_tool_xml.getroot().remove(macros_el) return clean_tool_xml